RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CFAP43Q8NDM7 1665 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 FOSP01100 380 aaPredicted RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 HPXP02790 462 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 NEFHP12036 1026 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 EAPPQ56P03 285 aaPredicted RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 DNTTIP2Q5QJE6 756 aaKnown RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 C9orf131Q5VYM1 1079 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 LARP1BQ659C4 914 aaKnown RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 KLHL10Q6JEL2 608 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 STAG1Q8WVM7 1258 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 ARMC5Q96C12 935 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 C8orf48Q96LL4 319 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 MPHOSPH6Q99547 160 aaKnown RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 SEZ6LQ9BYH1 1024 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 DUSP15Q9H1R2 295 aaPredicted RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 RANBP17Q9H2T7 1088 aaKnown RBP6.47□□□□□ -1.37
VPS41-209ENST00000457055 ADAMTS10Q9H324 1103 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 DUSP13Q9UII6 198 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 CEP131Q9UPN4 1083 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 TLR6Q9Y2C9 796 aa6.47□□□□□ -1.37
VPS41-209ENST00000457055 SETD1BQ9UPS6 1966 aaKnown RBP6.46□□□□□ -1.37
VPS41-209ENST00000457055 NPIPB6E9PJ23 425 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 DNAJC6O75061 913 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 RLBP1P12271 317 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 NAP1L1P55209 391 aaKnown RBP6.46□□□□□ -1.38
VPS41-209ENST00000457055 FAM160A1Q05DH4 1040 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 GAB4Q2WGN9 574 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 UTP14CQ5TAP6 766 aaKnown RBP6.46□□□□□ -1.38
VPS41-209ENST00000457055 DIEXFQ68CQ4 756 aaKnown RBP6.46□□□□□ -1.38
VPS41-209ENST00000457055 CCDC73Q6ZRK6 1079 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 LCA5Q86VQ0 697 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 JAZF1Q86VZ6 243 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 SIAH1Q8IUQ4 282 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 LMNTD2Q8IXW0 634 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 CCDC89Q8N998 374 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 FAM13CQ8NE31 585 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 ACRBPQ8NEB7 543 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 CYB5D2Q8WUJ1 264 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 UACAQ9BZF9 1416 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 GPATCH2Q9NW75 528 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 RGS17Q9UGC6 210 aaPredicted RBP6.46□□□□□ -1.38
VPS41-209ENST00000457055 CORINQ9Y5Q5 1042 aa6.46□□□□□ -1.38
VPS41-209ENST00000457055 MAGI3Q5TCQ9 1506 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 KDM5BQ9UGL1 1544 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 TNIKQ9UKE5 1360 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 WRNQ14191 1432 aaPredicted RBP eCLIP6.45□□□□□ -1.38
VPS41-209ENST00000457055 PABPN1LA6NDY0 278 aaKnown RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 TCAF2A6NFQ2 919 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 GOLGA6L22H0YM25 854 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 IFRD1O00458 451 aaPredicted RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 VIL1P09327 827 aaKnown RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 PLCG1P19174 1290 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 TRHRP34981 398 aaPredicted RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 CD151P48509 253 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 EGR3Q06889 387 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 ATG14Q6ZNE5 492 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 UBE2Q1Q7Z7E8 422 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 SMAP1Q8IYB5 467 aaPredicted RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 CHCHD4Q8N4Q1 142 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 DTWD2Q8NBA8 298 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 PPP1R13LQ8WUF5 828 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 ARPC5LQ9BPX5 153 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 CD320Q9NPF0 282 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 KCNH3Q9ULD8 1083 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 DIS3Q9Y2L1 958 aaKnown RBP6.45□□□□□ -1.38
VPS41-209ENST00000457055 PREX1Q8TCU6 1659 aa6.45□□□□□ -1.38
VPS41-209ENST00000457055 FER1L4A9Z1Z3 1794 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 DYTNA2CJ06 578 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 VGLL3A8MV65 326 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 IPO5O00410 1097 aaKnown RBP6.44□□□□□ -1.38
VPS41-209ENST00000457055 MTA2O94776 668 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 BPNT1O95861 308 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 PDGFRBP09619 1106 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 KCNA2P16389 499 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 LTKP29376 864 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 YARSP54577 528 aaKnown RBP6.44□□□□□ -1.38
VPS41-209ENST00000457055 BRD3Q15059 726 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 VPS72Q15906 364 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 KCNA10Q16322 511 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 ODR4Q5SWX8 454 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 SOGA3Q5TF21 947 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 KRT77Q7Z794 578 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 CHPFQ8IZ52 775 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 NGDNQ8NEJ9 315 aaKnown RBP6.44□□□□□ -1.38
VPS41-209ENST00000457055 SLC26A8Q96RN1 970 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 NOC4LQ9BVI4 516 aaKnown RBP6.44□□□□□ -1.38
VPS41-209ENST00000457055 GPR62Q9BZJ7 368 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 RNF32Q9H0A6 362 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 LZTS1Q9Y250 596 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 UHRF1BP1LA0JNW5 1464 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 KAT6BQ8WYB5 2073 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 ARAP3Q8WWN8 1544 aa6.44□□□□□ -1.38
VPS41-209ENST00000457055 UPK3BL1B0FP48 263 aa6.43□□□□□ -1.38
VPS41-209ENST00000457055 UPK3BL2E5RIL1 263 aa6.43□□□□□ -1.38
VPS41-209ENST00000457055 ETV2O00321 342 aaPredicted RBP6.43□□□□□ -1.38
VPS41-209ENST00000457055 SCAMP3O14828 347 aaKnown RBP6.43□□□□□ -1.38
VPS41-209ENST00000457055 KIF1CO43896 1103 aaKnown RBP6.43□□□□□ -1.38
VPS41-209ENST00000457055 COQ9O75208 318 aa6.43□□□□□ -1.38
VPS41-209ENST00000457055 FAM163BP0C2L3 166 aa6.43□□□□□ -1.38
VPS41-209ENST00000457055 MED14OSP0DP75 135 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms