RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GNASQ5JWF2 1037 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 AKNAD1Q5T1N1 836 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 KIAA0319Q5VV43 1072 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 TTBK2Q6IQ55 1244 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 Q6ZVU0 165 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 SLITRK4Q8IW52 837 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 TRIM42Q8IWZ5 723 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ANKRD24Q8TF21 1146 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 PAWRQ96IZ0 340 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 C8orf48Q96LL4 319 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 CENPOQ9BU64 300 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 PPP4R2Q9NY27 417 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 INTUQ9ULD6 942 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 BRD4O60885 1362 aaPredicted RBP5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 ADGRB1O14514 1584 aa5.49□□□□□ -1.53
CCDC88A-209ENST00000456975 FMN2Q9NZ56 1722 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 H0Y3Z8 333 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TBX3O15119 743 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 SGTAO43765 313 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 SASH3O75995 380 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ZIC2O95409 532 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 GRIA4P48058 902 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 BIRC3Q13489 604 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 RAPGEF1Q13905 1077 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 RASGRF1Q13972 1273 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 COL9A2Q14055 689 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 EIF4A2Q14240 407 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 KIF4BQ2VIQ3 1234 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TNNI3KQ59H18 835 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ACBD5Q5T8D3 534 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 RASIP1Q5U651 963 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 IER5Q5VY09 327 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 SNX32Q86XE0 403 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 BRSK2Q8IWQ3 736 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 EFCAB13Q8IY85 973 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ANKLE1Q8NAG6 615 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 CCDC191Q8NCU4 936 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 PPM1EQ8WY54 764 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ZNF496Q96IT1 587 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 UIMC1Q96RL1 719 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 INSM2Q96T92 566 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 GRIP2Q9C0E4 1043 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 LIN7BQ9HAP6 207 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 CFAP45Q9UL16 551 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ATP8A1Q9Y2Q0 1164 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 RRP15Q9Y3B9 282 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 RABGAP1Q9Y3P9 1069 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ZBED9Q6R2W3 1325 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 NRKQ7Z2Y5 1582 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ROBO2Q9HCK4 1378 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 UQCRHLA0A096LP55 91 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 IRS4O14654 1257 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 DDAH1O94760 285 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 UQCRHP07919 91 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 PSMA3P25788 255 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TARSP26639 723 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 GIPRP48546 466 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TRAPPC10P48553 1259 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 LMNB2Q03252 620 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 CBX2Q14781 532 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 LRRC41Q15345 812 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 UNC5DQ6UXZ4 953 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 HDGFL2Q7Z4V5 671 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TMEM110Q86TL2 294 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 HDAC7Q8WUI4 952 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 KCNN1Q92952 543 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 UROC1Q96N76 676 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 HHIPQ96QV1 700 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 TCF12Q99081 682 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 PICK1Q9NRD5 415 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ANKIB1Q9P2G1 1089 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 V9GYY5 206 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 DISP2A7MBM2 1401 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 YTHDC2Q9H6S0 1430 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 ERBB4Q15303 1308 aa5.48□□□□□ -1.53
CCDC88A-209ENST00000456975 MYOM1P52179 1685 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 THSD7AQ9UPZ6 1657 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SPTLC2O15270 562 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ZSCAN9O15535 394 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SLC26A4O43511 780 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CD2BP2O95400 341 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 RPS6KA3P51812 740 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SLMAPQ14BN4 828 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 WTAPQ15007 396 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ATP2B3Q16720 1220 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SPRED3Q2MJR0 410 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 RABL6Q3YEC7 729 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SPECC1Q5M775 1068 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 TMEM132EQ6IEE7 984 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 C6orf15Q6UXA7 325 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 LIAT1Q6ZQX7 453 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ANKRD18AQ8IVF6 992 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 FLCNQ8NFG4 579 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 SH3KBP1Q96B97 665 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CRBNQ96SW2 442 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 CRACR2AQ9BSW2 395 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 ZCCHC2Q9C0B9 1178 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 TMX1Q9H3N1 280 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 TRAK1Q9UPV9 953 aa5.47□□□□□ -1.53
CCDC88A-209ENST00000456975 KIAA1210Q9ULL0 1709 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms