RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 AMNQ9BXJ7 453 aa23.14■■□□□ 1.29
COL9A3-202ENST00000452372 MAF1Q9H063 256 aa23.14■■□□□ 1.29
COL9A3-202ENST00000452372 KLF18A0A0U1RQI7 1052 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 ZBTB43O43298 467 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 MSCO60682 206 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 MAGEA10P43363 369 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-202ENST00000452372 RCAN1P53805 252 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 CNTN2Q02246 1040 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 MAMDC4Q6UXC1 1216 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 HOMER1Q86YM7 354 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 RGS22Q8NE09 1264 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 BRF1Q92994 677 aa23.13■■□□□ 1.29
COL9A3-202ENST00000452372 PNMA6FA0A0J9YX94 578 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 PLEKHA8P1O95397 391 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 APOBRQ0VD83 1088 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 TRAF1Q13077 416 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 BAATQ14032 418 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-202ENST00000452372 SRBD1Q8N5C6 995 aaKnown RBP23.12■■□□□ 1.29
COL9A3-202ENST00000452372 IL17RAQ96F46 866 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 FGD4Q96M96 766 aa23.12■■□□□ 1.29
COL9A3-202ENST00000452372 SENP6Q9GZR1 1112 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-202ENST00000452372 RBM28Q9NW13 759 aaKnown RBP23.12■■□□□ 1.29
COL9A3-202ENST00000452372 MRPL11Q9Y3B7 192 aaKnown RBP23.12■■□□□ 1.29
COL9A3-202ENST00000452372 PPP1R11O60927 126 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-202ENST00000452372 RNF207Q6ZRF8 634 aa23.11■■□□□ 1.29
COL9A3-202ENST00000452372 TMTC3Q6ZXV5 915 aa23.11■■□□□ 1.29
COL9A3-202ENST00000452372 LRCH3Q96II8 777 aa23.11■■□□□ 1.29
COL9A3-202ENST00000452372 UPF3BQ9BZI7 483 aaKnown RBP23.11■■□□□ 1.29
COL9A3-202ENST00000452372 NRBP1Q9UHY1 535 aa23.11■■□□□ 1.29
COL9A3-202ENST00000452372 SYNGAP1Q96PV0 1343 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 PTPDC1A2A3K4 754 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 SOWAHBA6NEL2 793 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 DNM1LO00429 736 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 SEPT4O43236 478 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 EVCP57679 992 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 PPP2R5BQ15173 497 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 RTN1Q16799 776 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 GJC2Q5T442 439 aaPredicted RBP23.1■■□□□ 1.29
COL9A3-202ENST00000452372 ANO1Q5XXA6 986 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 CMTR1Q8N1G2 835 aaKnown RBP23.1■■□□□ 1.29
COL9A3-202ENST00000452372 RRP36Q96EU6 259 aaKnown RBP23.1■■□□□ 1.29
COL9A3-202ENST00000452372 PCDHA1Q9Y5I3 950 aa23.1■■□□□ 1.29
COL9A3-202ENST00000452372 RPS6P62753 249 aaKnown RBP23.09■■□□□ 1.29
COL9A3-202ENST00000452372 MCF2L2Q86YR7 1114 aa23.09■■□□□ 1.29
COL9A3-202ENST00000452372 NAP1L2Q9ULW6 460 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-202ENST00000452372 LCTP09848 1927 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 GOLGA8AA7E2F4 631 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 GOLGA8BA8MQT2 603 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 SNAI1O95863 264 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-202ENST00000452372 TOB2Q14106 344 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-202ENST00000452372 PIBF1Q8WXW3 757 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 TBC1D5Q92609 795 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 FAM217BQ9NTX9 383 aaPredicted RBP23.08■■□□□ 1.29
COL9A3-202ENST00000452372 PDRG1Q9NUG6 133 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 ADD3Q9UEY8 706 aaKnown RBP23.08■■□□□ 1.29
COL9A3-202ENST00000452372 MCM3APO60318 1980 aa23.08■■□□□ 1.29
COL9A3-202ENST00000452372 ASB14A6NK59 587 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 CALML3P27482 149 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 CDC27P30260 824 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 METAP2P50579 478 aaKnown RBP eCLIP23.07■■□□□ 1.28
COL9A3-202ENST00000452372 ATN1P54259 1190 aaPredicted RBP23.07■■□□□ 1.28
COL9A3-202ENST00000452372 SLC30A10Q6XR72 485 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 CCDC82Q8N4S0 544 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 ARRDC4Q8NCT1 418 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 PURBQ96QR8 312 aaKnown RBP23.07■■□□□ 1.28
COL9A3-202ENST00000452372 SEC63Q9UGP8 760 aaKnown RBP23.07■■□□□ 1.28
COL9A3-202ENST00000452372 CNPY2Q9Y2B0 182 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 ASTN1O14525 1302 aa23.07■■□□□ 1.28
COL9A3-202ENST00000452372 NID2Q14112 1375 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 LOC102724159A0A0B4J2E5 919 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 CCDC196A0A1B0GTZ2 297 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 ZNF865P0CJ78 1059 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-202ENST00000452372 GHRHRQ02643 423 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 FUT2Q10981 343 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 PWP2Q15269 919 aaKnown RBP23.06■■□□□ 1.28
COL9A3-202ENST00000452372 ARMCX2Q7L311 632 aa23.06■■□□□ 1.28
COL9A3-202ENST00000452372 ALDH8A1Q9H2A2 487 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-202ENST00000452372 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-202ENST00000452372 LAMA2P24043 3122 aaKnown RBP23.05■■□□□ 1.28
COL9A3-202ENST00000452372 OPLAHO14841 1288 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 PDIA3P30101 505 aaKnown RBP23.05■■□□□ 1.28
COL9A3-202ENST00000452372 ADD1P35611 737 aaKnown RBP23.05■■□□□ 1.28
COL9A3-202ENST00000452372 SLC39A5Q6ZMH5 540 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 SAMD3Q8N6K7 520 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 MORC4Q8TE76 937 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 ABHD16BQ9H3Z7 469 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 MAP3K20Q9NYL2 800 aaKnown RBP23.05■■□□□ 1.28
COL9A3-202ENST00000452372 COL6A3P12111 3177 aa23.05■■□□□ 1.28
COL9A3-202ENST00000452372 ALDH5A1P51649 535 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-202ENST00000452372 ACVR2BQ13705 512 aa23.04■■□□□ 1.28
COL9A3-202ENST00000452372 LRRC41Q15345 812 aa23.04■■□□□ 1.28
COL9A3-202ENST00000452372 LRIT3Q3SXY7 679 aa23.04■■□□□ 1.28
COL9A3-202ENST00000452372 DNERQ8NFT8 737 aa23.04■■□□□ 1.28
COL9A3-202ENST00000452372 SYTL5Q8TDW5 730 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-202ENST00000452372 ZNF274Q96GC6 653 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-202ENST00000452372 UBE2OQ9C0C9 1292 aaKnown RBP23.04■■□□□ 1.28
COL9A3-202ENST00000452372 CNTNAP5Q8WYK1 1306 aa23.04■■□□□ 1.28
COL9A3-202ENST00000452372 CFBP00751 764 aa23.03■■□□□ 1.28
COL9A3-202ENST00000452372 HSD17B4P51659 736 aa23.03■■□□□ 1.28
COL9A3-202ENST00000452372 RTP1P59025 263 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms