RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 DDAH1O94760 285 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 EXOSC10Q01780 885 aaKnown RBP14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 TNFAIP2Q03169 654 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 PWP2Q15269 919 aaKnown RBP14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 IQSEC1Q6DN90 963 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 SLC39A5Q6ZMH5 540 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 NFXL1Q6ZNB6 911 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 MAF1Q9H063 256 aa14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 ZMYND8Q9ULU4 1186 aaPredicted RBP14.81□□□□□ -0.04
PRPF40A-203ENST00000448428 MYADML2A6NDP7 307 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 OPLAHO14841 1288 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 SYN1P17600 705 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 KCNA10Q16322 511 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 TMEM63BQ5T3F8 832 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 CCSAPQ6IQ19 270 aaPredicted RBP14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 HOMER1Q86YM7 354 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 MCF2L2Q86YR7 1114 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 FBXO16Q8IX29 292 aaPredicted RBP14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 DNERQ8NFT8 737 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 SYTL5Q8TDW5 730 aaPredicted RBP14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 KCNB2Q92953 911 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 TAAR1Q96RJ0 339 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 TSEN34Q9BSV6 310 aaKnown RBP14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 UPF3AQ9H1J1 476 aaKnown RBP14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 VTA1Q9NP79 307 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 COL20A1Q9P218 1284 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 PCDHA1Q9Y5I3 950 aa14.8□□□□□ -0.04
PRPF40A-203ENST00000448428 PNMA6FA0A0J9YX94 578 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 CTAGE5O15320 804 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 C6orf222P0C671 652 aaPredicted RBP14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 SMPD1P17405 629 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 RXRAP19793 462 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 PTGS1P23219 599 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 KIF5BP33176 963 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 GJA9P57773 515 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 RTP1P59025 263 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 PDE4DQ08499 809 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 CHRDL2Q6WN34 429 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 NOL8Q76FK4 1167 aaKnown RBP14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 DHX32Q7L7V1 743 aaKnown RBP14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 SGMS1Q86VZ5 419 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 CTCFLQ8NI51 663 aaPredicted RBP14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 PIBF1Q8WXW3 757 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 TCEANC2Q96MN5 208 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 GNEQ9Y223 722 aaKnown RBP14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 SLC12A7Q9Y666 1083 aa14.79□□□□□ -0.04
PRPF40A-203ENST00000448428 A0A1W2PQ45 241 aaPredicted RBP14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 A0A1W2PQY0 241 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 REC8O95072 547 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 CFBP00751 764 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 EDNRBP24530 442 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 CST5P28325 142 aaPredicted RBP14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 SMARCA1P28370 1054 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 HSPA4P34932 840 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 ACLYP53396 1101 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 NKX3-2P78367 333 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 KRT32Q14532 448 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 SNX17Q15036 470 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 HABP4Q5JVS0 413 aaKnown RBP14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 GNASQ5JWF2 1037 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 RAB11FIP4Q86YS3 637 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 LZTS2Q9BRK4 669 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 SPZ1Q9BXG8 430 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 SPC25Q9HBM1 224 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 PCDH10Q9P2E7 1040 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 ATP11BQ9Y2G3 1177 aa14.78□□□□□ -0.04
PRPF40A-203ENST00000448428 KIAA1217Q5T5P2 1943 aa14.77□□□□□ -0.04
PRPF40A-203ENST00000448428 RBM47A0AV96 593 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 B4DLN1 442 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 DYNC1LI2O43237 492 aaPredicted RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 PLEKHA8P1O95397 391 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 ASGR1P07306 291 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 CALM1P0DP23 149 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 CALM2P0DP24 149 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 CALM3P0DP25 149 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 GNAQP50148 359 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 HSD17B4P51659 736 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 MRPL12P52815 198 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 BEX3Q00994 111 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 GHRHRQ02643 423 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 TRAF1Q13077 416 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 DUSP28Q4G0W2 176 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 C1orf53Q5VUE5 145 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 CMTR1Q8N1G2 835 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 SRBD1Q8N5C6 995 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 FANCBQ8NB91 859 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 PCSK9Q8NBP7 692 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 NSUN6Q8TEA1 469 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 RMDN3Q96TC7 470 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 MPHOSPH6Q99547 160 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 WDR11Q9BZH6 1224 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 PRO3102Q9H379 93 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 RBM27Q9P2N5 1060 aaKnown RBP14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 SNX14Q9Y5W7 946 aa14.77□□□□□ -0.05
PRPF40A-203ENST00000448428 CEP290O15078 2479 aa14.76□□□□□ -0.05
PRPF40A-203ENST00000448428 MOXD2PA6NHM9 499 aa14.76□□□□□ -0.05
PRPF40A-203ENST00000448428 HMGB1P09429 215 aaKnown RBP14.76□□□□□ -0.05
PRPF40A-203ENST00000448428 CPA1P15085 419 aa14.76□□□□□ -0.05
PRPF40A-203ENST00000448428 TRIM60Q495X7 471 aa14.76□□□□□ -0.05
PRPF40A-203ENST00000448428 TLK2Q86UE8 772 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms