RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 CCT5P48643 541 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 MCUQ8NE86 351 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 RSPH1Q8WYR4 309 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CLEC4MQ9H2X3 399 aaPredicted RBP9.68□□□□□ -0.86
NIPBL-202ENST00000448238 ARL2BPQ9Y2Y0 163 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 TRIM27P14373 513 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 GRK2P25098 689 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 TFAP4Q01664 338 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CNPY2Q9Y2B0 182 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 ZNF233A6NK53 670 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 TAC1P20366 129 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 FAM178BQ8IXR5 827 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CUEDC2Q9H467 287 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CPSF3Q9UKF6 684 aaKnown RBP9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CTNND2Q9UQB3 1225 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CCDC151A5D8V7 595 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 MAP3K13O43283 966 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 F13A1P00488 732 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 KIF19Q2TAC6 998 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 CC2D2BQ6DHV5 1058 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 DYDC2Q96IM9 177 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 SMARCA1P28370 1054 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 PDE6BP35913 854 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 GUCY2FP51841 1108 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 PPP1R42Q7Z4L9 355 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.68□□□□□ -0.862e-6■■■□□ 16.1
NIPBL-202ENST00000448238 TRPV6Q9H1D0 765 aa9.68□□□□□ -0.86
NIPBL-202ENST00000448238 NHEJ1Q9H9Q4 299 aaPredicted RBP9.68□□□□□ -0.86
NIPBL-202ENST00000448238 MSH2P43246 934 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 MECOMQ03112 1051 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 DMC1Q14565 340 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TRIM67Q6ZTA4 783 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 PCGF5Q86SE9 256 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 VPS39Q96JC1 886 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 GPBP1L1Q9HC44 474 aaPredicted RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SLC12A6Q9UHW9 1150 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 GYG2O15488 501 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 EIF3BP55884 814 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 USH1GQ495M9 461 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 RAPGEF5Q92565 580 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.67□□□□□ -0.869e-9■■□□□ 11.9
NIPBL-202ENST00000448238 ABCC11Q96J66 1382 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SAC3D1A6NKF1 404 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 CPP00450 1065 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 PAMP19021 973 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 NCF2P19878 526 aaPredicted RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 FAM81BQ96LP2 452 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 DEPDC7Q96QD5 511 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TMOD3Q9NYL9 352 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TRMT112Q9UI30 125 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 H0YCG3 227 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 KCNA1Q09470 495 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 CUL3Q13618 768 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SLFNL1Q499Z3 407 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 MCTP2Q6DN12 878 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 PASD1Q8IV76 773 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SLC26A7Q8TE54 656 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 HPS5Q9UPZ3 1129 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SLC4A7Q9Y6M7 1214 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 NKTRP30414 1462 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 KRT16P08779 473 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 PDE4DQ08499 809 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 AARS2Q5JTZ9 985 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 SPOUT1Q5T280 376 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 IKBIPQ70UQ0 350 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 WDR75Q8IWA0 830 aaKnown RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TTC17Q96AE7 1141 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 IQANK1A0A1B0GTG1 560 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 CYLC2Q14093 348 aaPredicted RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 C16orf71Q8IYS4 520 aaPredicted RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 RNF14Q9UBS8 474 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 MORC2Q9Y6X9 1032 aaPredicted RBP9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TRIM13O60858 407 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 TNNI2P48788 182 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 ESCO1Q5FWF5 840 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 FAM45BPQ6NSW5 357 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 CADPS2Q86UW7 1296 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 CERS3Q8IU89 383 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 COPG2Q9UBF2 871 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 FBXL5Q9UKA1 691 aa9.67□□□□□ -0.86
NIPBL-202ENST00000448238 ST5P78524 1137 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 TSR2Q969E8 191 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 CARD9Q9H257 536 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 UVRAGQ9P2Y5 699 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 PRIM1P49642 420 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 YWHAGP61981 247 aaKnown RBP eCLIP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 ACAD11Q709F0 780 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 HESX1Q9UBX0 185 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 CTNND1O60716 968 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 XRCC5P13010 732 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 YARSP54577 528 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 THOC5Q13769 683 aaKnown RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 CDH24Q86UP0 819 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 ZNF555Q8NEP9 628 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 TRIM11Q96F44 468 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 CCDC85AQ96PX6 553 aaPredicted RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 BIN2Q9UBW5 565 aaPredicted RBP9.66□□□□□ -0.86
NIPBL-202ENST00000448238 KCNK3O14649 394 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 BEND3Q5T5X7 828 aa9.66□□□□□ -0.86
NIPBL-202ENST00000448238 KLHL24Q6TFL4 600 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms