RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 LRRC37AA6NMS7 1700 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 BICDL2A1A5D9 508 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 RASSF10A6NK89 507 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 B4DLN1 442 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 TXKP42681 527 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 CHMP4BP1P59074 171 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 AMPD3Q01432 767 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 GRB10Q13322 594 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 BLOC1S4Q9NUP1 217 aa17.93■□□□□ 0.46
SHQ1-202ENST00000444040 PPP1R2P41236 205 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 FXR2P51116 673 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHQ1-202ENST00000444040 KIF4BQ2VIQ3 1234 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 CERS5Q8N5B7 392 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 CEP112Q8N8E3 955 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 KIAA0895Q8NCT3 520 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 SUGT1Q9Y2Z0 365 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 SLC37A4O43826 429 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 TBC1D8O95759 1140 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 CLEC10AQ8IUN9 316 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 EEF2KMTQ96G04 330 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 CALML4Q96GE6 196 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 PNMA5Q96PV4 448 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 COA1Q9GZY4 146 aa17.92■□□□□ 0.46
SHQ1-202ENST00000444040 PES1O00541 588 aaKnown RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 CALCRLQ16602 461 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 MEA1Q16626 185 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 DPP8Q6V1X1 898 aaPredicted RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 TMC4Q7Z404 712 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 CNOT6LQ96LI5 555 aaKnown RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 NAPGQ99747 312 aaPredicted RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 ZSWIM4Q9H7M6 989 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 PPEF1O14829 653 aaPredicted RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 RIMBP2O15034 1052 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 SASH3O75995 380 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 ADCY7P51828 1080 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 EIF6P56537 245 aaKnown RBP17.91■□□□□ 0.46
SHQ1-202ENST00000444040 LRWD1Q9UFC0 647 aa17.91■□□□□ 0.46
SHQ1-202ENST00000444040 TDP2O95551 362 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 MIIPQ5JXC2 388 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 SLC27A3Q5K4L6 730 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 CNNM4Q6P4Q7 775 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 ZSCAN29Q8IWY8 852 aaPredicted RBP17.9■□□□□ 0.46
SHQ1-202ENST00000444040 HPS3Q969F9 1004 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 JMJD4Q9H9V9 463 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 PUF60Q9UHX1 559 aaKnown RBP17.9■□□□□ 0.46
SHQ1-202ENST00000444040 NKRFO15226 690 aaKnown RBP eCLIP17.9■□□□□ 0.46
SHQ1-202ENST00000444040 ZNF543Q08ER8 600 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 SV2BQ7L1I2 683 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 SEMA6BQ9H3T3 888 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 GPCPD1Q9NPB8 672 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 AGPAT5Q9NUQ2 364 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 STK17AQ9UEE5 414 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 ATP6V0A2Q9Y487 856 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 MYMKA6NI61 221 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 F8W031 263 aaPredicted RBP17.9■□□□□ 0.46
SHQ1-202ENST00000444040 TTLL1O95922 423 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 TFRCP02786 760 aaKnown RBP17.9■□□□□ 0.46
SHQ1-202ENST00000444040 AMPD2Q01433 879 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 TBC1D8BQ0IIM8 1120 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 CENPPQ6IPU0 288 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 FAM114A1Q8IWE2 563 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 RETREG2Q8NC44 543 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 UBXN6Q9BZV1 441 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 ANKZF1Q9H8Y5 726 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 SERPINB13Q9UIV8 391 aa17.9■□□□□ 0.46
SHQ1-202ENST00000444040 C10orf71Q711Q0 1435 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 PPP1R11O60927 126 aaPredicted RBP17.89■□□□□ 0.45
SHQ1-202ENST00000444040 KIF20AO95235 890 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 KLK7P49862 253 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 HERVK_113P62684 666 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 PDIA5Q14554 519 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 NUP58Q9BVL2 599 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 TRIM10Q9UDY6 481 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 MYO3BQ8WXR4 1341 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 PNMA6FA0A0J9YX94 578 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 SHMT1P34896 483 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 CLK2P49760 499 aaKnown RBP17.89■□□□□ 0.45
SHQ1-202ENST00000444040 MCM6Q14566 821 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 PPP1R18Q6NYC8 613 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 UNC13DQ70J99 1090 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 ADGRF4Q8IZF3 695 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 LARP4BQ92615 738 aaKnown RBP17.89■□□□□ 0.45
SHQ1-202ENST00000444040 HAUS4Q9H6D7 363 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 SLC39A2Q9NP94 309 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 RIC8AQ9NPQ8 531 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 SWAP70Q9UH65 585 aa17.89■□□□□ 0.45
SHQ1-202ENST00000444040 ZHX1Q9UKY1 873 aaPredicted RBP17.89■□□□□ 0.45
SHQ1-202ENST00000444040 AFF2P51816 1311 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 PVALEFA0A1B0GWK0 134 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 ERGIC2Q96RQ1 377 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 NUDT12Q9BQG2 462 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 ARFGAP3Q9NP61 516 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 QSER1Q2KHR3 1735 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 CCDC151A5D8V7 595 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 POTEMA6NI47 508 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 TMEM266Q2M3C6 531 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 TSR1Q2NL82 804 aaKnown RBP17.88■□□□□ 0.45
SHQ1-202ENST00000444040 PPP4R3AQ6IN85 833 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 ZNF662Q6ZS27 426 aa17.88■□□□□ 0.45
SHQ1-202ENST00000444040 MSANTD4Q8NCY6 345 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms