RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ERO1AQ96HE7 468 aa18.12■□□□□ 0.49
USP40-206ENST00000443711 A1CFQ9NQ94 594 aaKnown RBP18.12■□□□□ 0.49
USP40-206ENST00000443711 TSKSQ9UJT2 592 aa18.12■□□□□ 0.49
USP40-206ENST00000443711 KCNJ14Q9UNX9 436 aa18.12■□□□□ 0.49
USP40-206ENST00000443711 PFASO15067 1338 aa18.12■□□□□ 0.49
USP40-206ENST00000443711 SLC15A5A6NIM6 579 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 H3BQV1 296 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 PIK3CDO00329 1044 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 TNPO2O14787 897 aaKnown RBP18.11■□□□□ 0.49
USP40-206ENST00000443711 PDIA4P13667 645 aaKnown RBP18.11■□□□□ 0.49
USP40-206ENST00000443711 HSD17B4P51659 736 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 GUCY1B3Q02153 619 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 BAATQ14032 418 aaPredicted RBP18.11■□□□□ 0.49
USP40-206ENST00000443711 ARHGEF6Q15052 776 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 SAFBQ15424 915 aaKnown RBP eCLIP18.11■□□□□ 0.49
USP40-206ENST00000443711 IFFO2Q5TF58 517 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 MCTP2Q6DN12 878 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 DAGLBQ8NCG7 672 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 BRMS1Q9HCU9 246 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 CYP39A1Q9NYL5 469 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 PCDHA4Q9UN74 947 aa18.11■□□□□ 0.49
USP40-206ENST00000443711 MEIS2O14770 477 aa18.1■□□□□ 0.49
USP40-206ENST00000443711 ECM2O94769 699 aaPredicted RBP18.1■□□□□ 0.49
USP40-206ENST00000443711 MMP1P03956 469 aa18.1■□□□□ 0.49
USP40-206ENST00000443711 RPS6P62753 249 aaKnown RBP18.1■□□□□ 0.49
USP40-206ENST00000443711 BLIDQ8IZY5 108 aa18.1■□□□□ 0.49
USP40-206ENST00000443711 ZNF296Q8WUU4 475 aaPredicted RBP18.1■□□□□ 0.49
USP40-206ENST00000443711 IPO9Q96P70 1041 aaKnown RBP18.1■□□□□ 0.49
USP40-206ENST00000443711 POTEB2H3BUK9 544 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 FOSP01100 380 aaPredicted RBP18.09■□□□□ 0.49
USP40-206ENST00000443711 SYT1P21579 422 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 HOXA13P31271 388 aaPredicted RBP18.09■□□□□ 0.49
USP40-206ENST00000443711 KRT2P35908 639 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 GRB14Q14449 540 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 USP17L6PQ6QN14 398 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 SLC30A10Q6XR72 485 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 REXO1Q8N1G1 1221 aaKnown RBP18.09■□□□□ 0.49
USP40-206ENST00000443711 CD99L2Q8TCZ2 262 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 SYTL5Q8TDW5 730 aaPredicted RBP18.09■□□□□ 0.49
USP40-206ENST00000443711 TRIM47Q96LD4 638 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 ARHGAP39Q9C0H5 1083 aa18.09■□□□□ 0.49
USP40-206ENST00000443711 BIN2Q9UBW5 565 aaPredicted RBP18.09■□□□□ 0.49
USP40-206ENST00000443711 GNRH1P01148 92 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 HOXD10P28358 340 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 ADORA2AP29274 412 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 CTGFP29279 349 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 NPY5RQ15761 445 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 UBE2SQ16763 222 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 MORN1Q5T089 497 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 DPP9Q86TI2 863 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 FCHSD1Q86WN1 690 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 DIS3L2Q8IYB7 885 aaKnown RBP18.08■□□□□ 0.48
USP40-206ENST00000443711 NUDT12Q9BQG2 462 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 SLC5A4Q9NY91 659 aa18.08■□□□□ 0.48
USP40-206ENST00000443711 ZSWIM8A7E2V4 1837 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 ZNF236Q9UL36 1845 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 DNAJC25-GNG10A0A024R161 153 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 SPDYE3A6NKU9 549 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 FOXN1O15353 648 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 STX6O43752 255 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 PGK2P07205 417 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 HSPA1AP0DMV8 641 aaKnown RBP18.07■□□□□ 0.48
USP40-206ENST00000443711 HSPA1BP0DMV9 641 aaKnown RBP18.07■□□□□ 0.48
USP40-206ENST00000443711 CLK2P49760 499 aaKnown RBP18.07■□□□□ 0.48
USP40-206ENST00000443711 MAP2K5Q13163 448 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 AP3B2Q13367 1082 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 JAKMIP3Q5VZ66 844 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 SOCS4Q8WXH5 440 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 PCDHA6Q9UN73 950 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 PCDHA8Q9Y5H6 950 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 PLXNA1Q9UIW2 1896 aa18.07■□□□□ 0.48
USP40-206ENST00000443711 VPS37CA5D8V6 355 aaPredicted RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 M0R2N6 131 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 ADAMTS3O15072 1205 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 HSPA8P11142 646 aaKnown RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 CTCFP49711 727 aaPredicted RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 CNTN2Q02246 1040 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 GNL2Q13823 731 aaKnown RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 MCTP1Q6DN14 999 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 FAM133AQ8N9E0 248 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 OXER1Q8TDS5 423 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 TAAR1Q96RJ0 339 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 FOXP1Q9H334 677 aaPredicted RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 EHMT1Q9H9B1 1298 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 TMEM260Q9NX78 707 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 ADD3Q9UEY8 706 aaKnown RBP18.06■□□□□ 0.48
USP40-206ENST00000443711 GJD2Q9UKL4 321 aa18.06■□□□□ 0.48
USP40-206ENST00000443711 CASP8AP2Q9UKL3 1982 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 BTBD18B2RXH4 712 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 COBLO75128 1261 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 RGS2P41220 211 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 ZNF792Q3KQV3 632 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 KRT25Q7Z3Z0 450 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 DNERQ8NFT8 737 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 RASGRP4Q8TDF6 673 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 USP6NLQ92738 828 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 RMDN3Q96TC7 470 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 COL20A1Q9P218 1284 aa18.05■□□□□ 0.48
USP40-206ENST00000443711 DIS3Q9Y2L1 958 aaKnown RBP18.05■□□□□ 0.48
USP40-206ENST00000443711 LCTP09848 1927 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms