RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 QRICH1Q2TAL8 776 aa23.13■■□□□ 1.29
SHROOM1-204ENST00000440118 IQSEC1Q6DN90 963 aa23.13■■□□□ 1.29
SHROOM1-204ENST00000440118 FBXO11Q86XK2 927 aa23.13■■□□□ 1.29
SHROOM1-204ENST00000440118 PDGFCQ9NRA1 345 aa23.13■■□□□ 1.29
SHROOM1-204ENST00000440118 ELP1O95163 1332 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 A0A0U1RQG5 324 aaPredicted RBP23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 KLRF2D3W0D1 207 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 SOX1O00570 391 aaPredicted RBP23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 DYNC1LI2O43237 492 aaPredicted RBP23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 SMPD1P17405 629 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 TMEM67Q5HYA8 995 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 MCF2L2Q86YR7 1114 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 MAP4K1Q92918 833 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 LRCH3Q96II8 777 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 TMEM39AQ9NV64 488 aa23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 MRPL11Q9Y3B7 192 aaKnown RBP23.12■■□□□ 1.29
SHROOM1-204ENST00000440118 LAMA3Q16787 3333 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 RAG1P15918 1043 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 CCSAPQ6IQ19 270 aaPredicted RBP23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 CASC1Q6TDU7 716 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 CHST3Q7LGC8 479 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 SH3RF1Q7Z6J0 888 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 STAG2Q8N3U4 1231 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 DNERQ8NFT8 737 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 MORC4Q8TE76 937 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 BADQ92934 168 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 JMJD4Q9H9V9 463 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 ANO2Q9NQ90 1003 aa23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 GNEQ9Y223 722 aaKnown RBP23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 BAZ2BQ9UIF8 2168 aaKnown RBP23.11■■□□□ 1.29
SHROOM1-204ENST00000440118 TAPT1Q6NXT6 567 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 CATIPQ7Z7H3 387 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 HOMER1Q86YM7 354 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 ESYT1Q9BSJ8 1104 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 AMNQ9BXJ7 453 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 WDR11Q9BZH6 1224 aa23.1■■□□□ 1.29
SHROOM1-204ENST00000440118 TRIM43BA6NCK2 446 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 TLR3O15455 904 aaKnown RBP23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 PPP2R5BQ15173 497 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 LRIT3Q3SXY7 679 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 BMP2KLQ5H9B9 411 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 CXCL17Q6UXB2 119 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 STOX1Q6ZVD7 989 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 ANKRD33Q7Z3H0 272 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 TRIM43Q96BQ3 446 aaPredicted RBP23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 TOX2Q96NM4 488 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 MAD2L2Q9UI95 211 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 TAF6LQ9Y6J9 622 aa23.09■■□□□ 1.29
SHROOM1-204ENST00000440118 CABYRO75952 493 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 GRM4Q14833 912 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 DUSP28Q4G0W2 176 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 BRDTQ58F21 947 aaPredicted RBP23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 SKAP1Q86WV1 359 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 RGS22Q8NE09 1264 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 OR6J1Q8NGC5 347 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 CCDC136Q96JN2 1154 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 Q9Y3F1 56 aa23.08■■□□□ 1.29
SHROOM1-204ENST00000440118 ARVCFO00192 962 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 CFBP00751 764 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 PTGS1P23219 599 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 NFXL1Q6ZNB6 911 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 SCFD2Q8WU76 684 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 MAF1Q9H063 256 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 KIAA1217Q5T5P2 1943 aa23.07■■□□□ 1.28
SHROOM1-204ENST00000440118 PALM3A6NDB9 673 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 ZBTB5O15062 677 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 KIAA0355O15063 1070 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 CTAGE5O15320 804 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 CPT1AP50416 773 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 NKX3-2P78367 333 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 FAAP100Q0VG06 881 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 TRAF1Q13077 416 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 ARHGEF16Q5VV41 709 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 MB21D2Q8IYB1 491 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 CTCFLQ8NI51 663 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 SYTL5Q8TDW5 730 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 NSUN6Q8TEA1 469 aaKnown RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 RMDN3Q96TC7 470 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 LSG1Q9H089 658 aaKnown RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 SENP2Q9HC62 589 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 GPHNQ9NQX3 736 aaPredicted RBP23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 PCDHA1Q9Y5I3 950 aa23.06■■□□□ 1.28
SHROOM1-204ENST00000440118 PRC1O43663 620 aa23.05■■□□□ 1.28
SHROOM1-204ENST00000440118 MCM5P33992 734 aa23.05■■□□□ 1.28
SHROOM1-204ENST00000440118 FPGSQ05932 587 aa23.05■■□□□ 1.28
SHROOM1-204ENST00000440118 TTLL4Q14679 1199 aa23.05■■□□□ 1.28
SHROOM1-204ENST00000440118 NKRFO15226 690 aaKnown RBP eCLIP23.04■■□□□ 1.286e-8■□□□□ 8.7
SHROOM1-204ENST00000440118 NEFLP07196 543 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 MYL3P08590 195 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 EDNRBP24530 442 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 ANTXR2P58335 489 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 TMEM63BQ5T3F8 832 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 RNF20Q5VTR2 975 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 TBC1D5Q92609 795 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 TAAR1Q96RJ0 339 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 POLR3EQ9NVU0 708 aa23.04■■□□□ 1.28
SHROOM1-204ENST00000440118 CCDC69A6NI79 296 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 SLC27A2O14975 620 aa23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 TXNP10599 105 aaKnown RBP23.03■■□□□ 1.28
SHROOM1-204ENST00000440118 EIF2AK2P19525 551 aaKnown RBP23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms