RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 RNF146Q9NTX7 359 aa11.71□□□□□ -0.53
SMPD4-208ENST00000439029 CLDND1Q9NY35 253 aa11.71□□□□□ -0.53
SMPD4-208ENST00000439029 NOD1Q9Y239 953 aa11.71□□□□□ -0.53
SMPD4-208ENST00000439029 RIF1Q5UIP0 2472 aaKnown RBP11.7□□□□□ -0.54
SMPD4-208ENST00000439029 SIP14410 1827 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 TMEM221A6NGB7 291 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 M0R296 226 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 PITPNM1O00562 1244 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 MBD4O95243 580 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 SNAP25P60880 206 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 BFSP2Q13515 415 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 POLA2Q14181 598 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 BANK1Q8NDB2 785 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 ATOH1Q92858 354 aaPredicted RBP11.7□□□□□ -0.54
SMPD4-208ENST00000439029 ACAD9Q9H845 621 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 POLR3EQ9NVU0 708 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 PRKAG3Q9UGI9 489 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 TANC1Q9C0D5 1861 aa11.7□□□□□ -0.54
SMPD4-208ENST00000439029 TCRBV5S4A2TA0A5A2 114 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 GOLIM4O00461 696 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 CSPG5O95196 566 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 CHGBP05060 677 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 ALAS1P13196 640 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 HERC4Q5GLZ8 1057 aaPredicted RBP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 AACSQ86V21 672 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 SUGP1Q8IWZ8 645 aaKnown RBP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 OR6J1Q8NGC5 347 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 EDAQ92838 391 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 PABPC5Q96DU9 382 aaKnown RBP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 MRPL38Q96DV4 380 aaKnown RBP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 DNAJC2Q99543 621 aaKnown RBP11.69□□□□□ -0.54
SMPD4-208ENST00000439029 CLIP2Q9UDT6 1046 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 FAM50BQ9Y247 325 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 Q9Y3F1 56 aa11.69□□□□□ -0.54
SMPD4-208ENST00000439029 CACNA1BQ00975 2339 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 NBNO60934 754 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 VCPP55072 806 aaKnown RBP11.68□□□□□ -0.54
SMPD4-208ENST00000439029 DLX2Q07687 328 aaPredicted RBP11.68□□□□□ -0.54
SMPD4-208ENST00000439029 PTGISQ16647 500 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 PTPROQ16827 1216 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 DUSP28Q4G0W2 176 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 MUM1L1Q5H9M0 696 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.68□□□□□ -0.54
SMPD4-208ENST00000439029 TRIM67Q6ZTA4 783 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 RPAINQ86UA6 219 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 LRRC47Q8N1G4 583 aaKnown RBP11.68□□□□□ -0.54
SMPD4-208ENST00000439029 COPS5Q92905 334 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 CLUAP1Q96AJ1 413 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 TRERF1Q96PN7 1200 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 WDR11Q9BZH6 1224 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 FAM186AA6NE01 2351 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 CACNA1GO43497 2377 aa11.68□□□□□ -0.54
SMPD4-208ENST00000439029 SCN10AQ9Y5Y9 1956 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 RGS20O76081 388 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 SELPP16109 830 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 LTBRP36941 435 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 CPT1AP50416 773 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 ATP8B2P98198 1209 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 GPM6BQ13491 265 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 EPC2Q52LR7 807 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 TIGD5Q53EQ6 642 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 CNKSR3Q6P9H4 555 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 NSMFQ6X4W1 530 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 LRRC8DQ7L1W4 858 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 AMOTL1Q8IY63 956 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 SSH3Q8TE77 659 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 ALG13Q9NP73 1137 aaKnown RBP11.67□□□□□ -0.54
SMPD4-208ENST00000439029 VTA1Q9NP79 307 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 FEM1BQ9UK73 627 aa11.67□□□□□ -0.54
SMPD4-208ENST00000439029 TMEM232C9JQI7 657 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 H0Y858 1186 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 RASA1P20936 1047 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 OAZ1P54368 228 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 NFRKBQ6P4R8 1299 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 CTR9Q6PD62 1173 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 ASCL5Q7RTU5 278 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 DHX38Q92620 1227 aaKnown RBP11.66□□□□□ -0.54
SMPD4-208ENST00000439029 CTAGE1Q96RT6 745 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 TLR9Q9NR96 1032 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 ATP8A2Q9NTI2 1148 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 NYAP2Q9P242 653 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 CTNNA3Q9UI47 895 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 SLC4A4Q9Y6R1 1079 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 TRIOO75962 3097 aa11.66□□□□□ -0.54
SMPD4-208ENST00000439029 ABHD14A-ACY1A0A1B0GW23 586 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 STXBP3O00186 592 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 MBTPS2O43462 519 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 TRIM27P14373 513 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 RARSP54136 660 aaKnown RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 IKQ13123 557 aaPredicted RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 IKBKEQ14164 716 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 TTF1Q15361 905 aaPredicted RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 SMAD2Q15796 467 aaKnown RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 LRRFIP1Q32MZ4 808 aaKnown RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 SLFN13Q68D06 897 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 GDF6Q6KF10 455 aaPredicted RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 TMED8Q6PL24 325 aaPredicted RBP11.65□□□□□ -0.54
SMPD4-208ENST00000439029 BMP8AQ7Z5Y6 402 aa11.65□□□□□ -0.54
SMPD4-208ENST00000439029 MYOCDQ8IZQ8 938 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms