RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 RBM28Q9NW13 759 aaKnown RBP21.61■■□□□ 1.05
SHH-203ENST00000435425 ASTN1O14525 1302 aa21.6■■□□□ 1.05
SHH-203ENST00000435425 ASB14A6NK59 587 aa21.6■■□□□ 1.05
SHH-203ENST00000435425 CFBP00751 764 aa21.6■■□□□ 1.05
SHH-203ENST00000435425 METAP2P50579 478 aaKnown RBP eCLIP21.6■■□□□ 1.05
SHH-203ENST00000435425 LHX8Q68G74 356 aa21.6■■□□□ 1.05
SHH-203ENST00000435425 PDRG1Q9NUG6 133 aa21.6■■□□□ 1.05
SHH-203ENST00000435425 ADD3Q9UEY8 706 aaKnown RBP21.6■■□□□ 1.05
SHH-203ENST00000435425 SEPT4O43236 478 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 FARP2O94887 1054 aaPredicted RBP21.59■■□□□ 1.05
SHH-203ENST00000435425 ZNF865P0CJ78 1059 aaPredicted RBP21.59■■□□□ 1.05
SHH-203ENST00000435425 CDC27P30260 824 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 ALDH5A1P51649 535 aaPredicted RBP21.59■■□□□ 1.05
SHH-203ENST00000435425 TRAF1Q13077 416 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 ACVR2BQ13705 512 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 TOB2Q14106 344 aaPredicted RBP21.59■■□□□ 1.05
SHH-203ENST00000435425 EEPD1Q7L9B9 569 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 RGS22Q8NE09 1264 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 AGXT2Q9BYV1 514 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 NRBP1Q9UHY1 535 aa21.59■■□□□ 1.05
SHH-203ENST00000435425 MSCO60682 206 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 MYCNP04198 464 aaPredicted RBP21.58■■□□□ 1.05
SHH-203ENST00000435425 ANAPC15P60006 121 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 FBXL16Q8N461 479 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 TAAR1Q96RJ0 339 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 ABHD16BQ9H3Z7 469 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 OGDHLQ9ULD0 1010 aa21.58■■□□□ 1.05
SHH-203ENST00000435425 OPLAHO14841 1288 aa21.57■■□□□ 1.04
SHH-203ENST00000435425 ADD1P35611 737 aaKnown RBP21.57■■□□□ 1.04
SHH-203ENST00000435425 CCT2P78371 535 aaKnown RBP21.57■■□□□ 1.04
SHH-203ENST00000435425 SYTL5Q8TDW5 730 aaPredicted RBP21.57■■□□□ 1.04
SHH-203ENST00000435425 DIS3LQ8TF46 1054 aaKnown RBP21.57■■□□□ 1.04
SHH-203ENST00000435425 FAM217BQ9NTX9 383 aaPredicted RBP21.57■■□□□ 1.04
SHH-203ENST00000435425 COL20A1Q9P218 1284 aa21.57■■□□□ 1.04
SHH-203ENST00000435425 CNTNAP5Q8WYK1 1306 aa21.56■■□□□ 1.04
SHH-203ENST00000435425 LRRC37A2A6NM11 1700 aa21.56■■□□□ 1.04
SHH-203ENST00000435425 AKR1A1P14550 325 aa21.56■■□□□ 1.04
SHH-203ENST00000435425 HOXA13P31271 388 aaPredicted RBP21.56■■□□□ 1.04
SHH-203ENST00000435425 LENG1Q96BZ8 264 aaPredicted RBP21.56■■□□□ 1.04
SHH-203ENST00000435425 PAWRQ96IZ0 340 aaKnown RBP21.56■■□□□ 1.04
SHH-203ENST00000435425 FAM184BQ9ULE4 1060 aa21.56■■□□□ 1.04
SHH-203ENST00000435425 RARBP10826 455 aa21.55■■□□□ 1.04
SHH-203ENST00000435425 PDIA3P30101 505 aaKnown RBP21.55■■□□□ 1.04
SHH-203ENST00000435425 RCAN1P53805 252 aa21.55■■□□□ 1.04
SHH-203ENST00000435425 PDE4DQ08499 809 aa21.55■■□□□ 1.04
SHH-203ENST00000435425 CCDC144BQ3MJ40 725 aa21.55■■□□□ 1.04
SHH-203ENST00000435425 HEATR3Q7Z4Q2 680 aa21.55■■□□□ 1.04
SHH-203ENST00000435425 FBXO16Q8IX29 292 aaPredicted RBP21.55■■□□□ 1.04
SHH-203ENST00000435425 MPHOSPH6Q99547 160 aaKnown RBP21.55■■□□□ 1.04
SHH-203ENST00000435425 V9GY48 417 aaPredicted RBP21.55■■□□□ 1.04
SHH-203ENST00000435425 CCDC196A0A1B0GTZ2 297 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 GCOM1H8Y6P7 765 aaPredicted RBP21.54■■□□□ 1.04
SHH-203ENST00000435425 POLR2MP0CAP2 368 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 CAPN2P17655 700 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 HSD17B4P51659 736 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 STK3Q13188 491 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 GJC2Q5T442 439 aaPredicted RBP21.54■■□□□ 1.04
SHH-203ENST00000435425 ARHGEF16Q5VV41 709 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 FCHSD1Q86WN1 690 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 ANKLE1Q8NAG6 615 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 DNERQ8NFT8 737 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 GPKOWQ92917 476 aaPredicted RBP eCLIP21.54■■□□□ 1.04
SHH-203ENST00000435425 RMDN3Q96TC7 470 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 KATNBL1Q9H079 304 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 NCOA5Q9HCD5 579 aaKnown RBP21.54■■□□□ 1.04
SHH-203ENST00000435425 PDGFCQ9NRA1 345 aa21.54■■□□□ 1.04
SHH-203ENST00000435425 B4DLN1 442 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 PPFIA3O75145 1194 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 EIF2AK2P19525 551 aaKnown RBP21.53■■□□□ 1.04
SHH-203ENST00000435425 MRPL12P52815 198 aaKnown RBP21.53■■□□□ 1.04
SHH-203ENST00000435425 FUT2Q10981 343 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 PPP2R5BQ15173 497 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 NOL8Q76FK4 1167 aaKnown RBP21.53■■□□□ 1.04
SHH-203ENST00000435425 MORC4Q8TE76 937 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 MAF1Q9H063 256 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 XPNPEP3Q9NQH7 507 aa21.53■■□□□ 1.04
SHH-203ENST00000435425 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.52■■□□□ 1.04
SHH-203ENST00000435425 PGK1P00558 417 aa21.52■■□□□ 1.04
SHH-203ENST00000435425 ADCYAP1R1P41586 468 aa21.52■■□□□ 1.04
SHH-203ENST00000435425 MNX1P50219 401 aaPredicted RBP21.52■■□□□ 1.04
SHH-203ENST00000435425 EVCP57679 992 aa21.52■■□□□ 1.04
SHH-203ENST00000435425 NECAB2Q7Z6G3 386 aa21.52■■□□□ 1.04
SHH-203ENST00000435425 ARRDC4Q8NCT1 418 aa21.52■■□□□ 1.04
SHH-203ENST00000435425 NSUN6Q8TEA1 469 aaKnown RBP21.52■■□□□ 1.04
SHH-203ENST00000435425 LOC102724159A0A0B4J2E5 919 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 ADCY6O43306 1168 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 NEK4P51957 841 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 AK2P54819 239 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 TNFAIP2Q03169 654 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 PWP2Q15269 919 aaKnown RBP21.51■■□□□ 1.03
SHH-203ENST00000435425 WWC2Q6AWC2 1192 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 TAPT1Q6NXT6 567 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 UBE2Q1Q7Z7E8 422 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 SAMD3Q8N6K7 520 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 SMARCC2Q8TAQ2 1214 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 CUL5Q93034 780 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 PHKBQ93100 1093 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 ZNF274Q96GC6 653 aaPredicted RBP21.51■■□□□ 1.03
SHH-203ENST00000435425 C11orf49Q9H6J7 331 aa21.51■■□□□ 1.03
SHH-203ENST00000435425 VTA1Q9NP79 307 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms