RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 DHX16O60231 1041 aaKnown RBP14.38□□□□□ -0.11
USP40-205ENST00000430158 PGK2P07205 417 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 SLC4A3P48751 1232 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 STK3Q13188 491 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 USH1GQ495M9 461 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 WDR78Q5VTH9 848 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 TYW1BQ6NUM6 668 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 HOMER1Q86YM7 354 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 NECAB1Q8N987 351 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 FAM133AQ8N9E0 248 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 PIBF1Q8WXW3 757 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 GTF3C6Q969F1 213 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 MCOLN1Q9GZU1 580 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 CYP39A1Q9NYL5 469 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 FLRT1Q9NZU1 646 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 NAP1L2Q9ULW6 460 aaPredicted RBP14.38□□□□□ -0.11
USP40-205ENST00000430158 PCDHA1Q9Y5I3 950 aa14.38□□□□□ -0.11
USP40-205ENST00000430158 RGS2P41220 211 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 KCTD2Q14681 263 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 CCL14Q16627 93 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 NOL8Q76FK4 1167 aaKnown RBP14.37□□□□□ -0.11
USP40-205ENST00000430158 CCAR1Q8IX12 1150 aaKnown RBP14.37□□□□□ -0.11
USP40-205ENST00000430158 PXYLP1Q8TE99 480 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 TRIB2Q92519 343 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 PHKBQ93100 1093 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 APBA2Q99767 749 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 SLKQ9H2G2 1235 aaPredicted RBP14.37□□□□□ -0.11
USP40-205ENST00000430158 DIS3Q9Y2L1 958 aaKnown RBP14.37□□□□□ -0.11
USP40-205ENST00000430158 IVNS1ABPQ9Y6Y0 642 aa14.37□□□□□ -0.11
USP40-205ENST00000430158 SOWAHBA6NEL2 793 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 ADCY3O60266 1144 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 FDPSP14324 419 aaKnown RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 CYP2B6P20813 491 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 HSD17B4P51659 736 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 CNTN2Q02246 1040 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 BAATQ14032 418 aaPredicted RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 PFKFB3Q16875 520 aaPredicted RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 WWC2Q6AWC2 1192 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 PURBQ96QR8 312 aaKnown RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 RNF26Q9BY78 433 aaPredicted RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 COL20A1Q9P218 1284 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 MRPL11Q9Y3B7 192 aaKnown RBP14.36□□□□□ -0.11
USP40-205ENST00000430158 PFASO15067 1338 aa14.36□□□□□ -0.11
USP40-205ENST00000430158 STXBP3O00186 592 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 DTNBO60941 627 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 PPFIA3O75145 1194 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 ELNP15502 786 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 RPS6P62753 249 aaKnown RBP14.35□□□□□ -0.11
USP40-205ENST00000430158 MAP3K21Q5TCX8 1036 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 OLFML2BQ68BL8 750 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 SLC30A10Q6XR72 485 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 ANKRD35Q8N283 1001 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 NSUN7Q8NE18 718 aaKnown RBP14.35□□□□□ -0.11
USP40-205ENST00000430158 SYTL5Q8TDW5 730 aaPredicted RBP14.35□□□□□ -0.11
USP40-205ENST00000430158 MORC4Q8TE76 937 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 GPKOWQ92917 476 aaPredicted RBP eCLIP14.35□□□□□ -0.11
USP40-205ENST00000430158 ARMC5Q96C12 935 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 MAML3Q96JK9 1138 aa14.35□□□□□ -0.11
USP40-205ENST00000430158 ZSCAN31Q96LW9 406 aaPredicted RBP14.35□□□□□ -0.11
USP40-205ENST00000430158 MEIS2O14770 477 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 ADAMTS3O15072 1205 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SCG2P13521 617 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 GRK4P32298 578 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 TRIM32Q13049 653 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 TRAF1Q13077 416 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 MAMDC4Q6UXC1 1216 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 NSMFQ6X4W1 530 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 RNF207Q6ZRF8 634 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 ZNF467Q7Z7K2 595 aaPredicted RBP14.34□□□□□ -0.11
USP40-205ENST00000430158 DPP9Q86TI2 863 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SAMD3Q8N6K7 520 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SLAIN1Q8ND83 568 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 RAET1EQ8TD07 263 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 DDX11Q96FC9 970 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SLC26A6Q9BXS9 759 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SCUBE2Q9NQ36 999 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SH2B1Q9NRF2 756 aaPredicted RBP14.34□□□□□ -0.11
USP40-205ENST00000430158 BARHL2Q9NY43 387 aa14.34□□□□□ -0.11
USP40-205ENST00000430158 SEC63Q9UGP8 760 aaKnown RBP14.34□□□□□ -0.11
USP40-205ENST00000430158 PIK3CDO00329 1044 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 ST18O60284 1047 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 MCF2L2Q86YR7 1114 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 SMARCC2Q8TAQ2 1214 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 SH3TC2Q8TF17 1288 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 TMX3Q96JJ7 454 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 AIFM3Q96NN9 605 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 KATNBL1Q9H079 304 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 CWC22Q9HCG8 908 aaKnown RBP14.33□□□□□ -0.12
USP40-205ENST00000430158 MAP3K20Q9NYL2 800 aaKnown RBP14.33□□□□□ -0.12
USP40-205ENST00000430158 RBM27Q9P2N5 1060 aaKnown RBP14.33□□□□□ -0.12
USP40-205ENST00000430158 STK36Q9NRP7 1315 aa14.33□□□□□ -0.12
USP40-205ENST00000430158 LRRC37A2A6NM11 1700 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 hCG_1984214I3L0E3 225 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 CPLX1O14810 134 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 MAP3K13O43283 966 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 JAK2O60674 1132 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 SNAI1O95863 264 aaPredicted RBP14.32□□□□□ -0.12
USP40-205ENST00000430158 EDNRBP24530 442 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 MCM2P49736 904 aa14.32□□□□□ -0.12
USP40-205ENST00000430158 SSRP1Q08945 709 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms