RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 NUP43Q8NFH3 380 aa8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 OSBP2Q969R2 916 aa8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 INTS4Q96HW7 963 aaKnown RBP8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 C7orf72A4D263 438 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 ARNTLO00327 626 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 MEFVO15553 781 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 PRODHO43272 600 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 CYP4F8P98187 520 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 KCNAB2Q13303 367 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 KIR3DS1Q14943 382 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 ZC3H12BQ5HYM0 836 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 YOD1Q5VVQ6 348 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 NSMFQ6X4W1 530 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 IRF2BP1Q8IU81 584 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 CCDC103Q8IW40 242 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 NPFFR2Q9Y5X5 522 aa8.58□□□□□ -1.04
CCDC88A-206ENST00000430086 A0A1W2PQ27 194 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 A0A1W2PQ64 194 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 A0A1W2PQC6 194 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 A0A1W2PQD8 194 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 NPHS1O60500 1241 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 FAM153BP0C7A2 387 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 ERVFRD-1P60508 538 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 MBLAC2Q68D91 279 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 SCUBE1Q8IWY4 988 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 PPIL6Q8IXY8 311 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 DIO2Q92813 273 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 LIN37Q96GY3 246 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 PIF1Q9H611 641 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 PDLIM7Q9NR12 457 aa8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 TMEFF2Q9UIK5 374 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-206ENST00000430086 MSL3P1P0C860 447 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 ARL4AP40617 200 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 GALK1P51570 392 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 INF2Q27J81 1249 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 MPZL3Q6UWV2 235 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 SIRT2Q8IXJ6 389 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 LILRB2Q8N423 598 aa8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 THAP3Q8WTV1 239 aaPredicted RBP8.56□□□□□ -1.04
CCDC88A-206ENST00000430086 TRBV23-1A0A0A0MS06 115 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 PAX4O43316 350 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 LTBRP36941 435 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 C2orf27AQ580R0 203 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 FOXB2Q5VYV0 432 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 SLC26A8Q96RN1 970 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 CDC6Q99741 560 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 TNFRSF12AQ9NP84 129 aa8.55□□□□□ -1.04
CCDC88A-206ENST00000430086 PPP1R11O60927 126 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-206ENST00000430086 RSPO2Q6UXX9 243 aaPredicted RBP8.54□□□□□ -1.04
CCDC88A-206ENST00000430086 MTA3Q9BTC8 594 aa8.54□□□□□ -1.04
CCDC88A-206ENST00000430086 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.54□□□□□ -1.04
CCDC88A-206ENST00000430086 GTF2A2P52657 109 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 NTRK3Q16288 839 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 FAM209AQ5JX71 171 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 LZTR1Q8N653 840 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 RCBTB1Q8NDN9 531 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 ZSWIM2Q8NEG5 633 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 DCAF4Q8WV16 495 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 DPF3Q92784 378 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 KISS1RQ969F8 398 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 EXOC2Q96KP1 924 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 IPO9Q96P70 1041 aaKnown RBP8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 FMNL2Q96PY5 1086 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 DHRS4Q9BTZ2 278 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 GPR27Q9NS67 375 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 GULP1Q9UBP9 304 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 RNF114Q9Y508 228 aa8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 TIMM13Q9Y5L4 95 aaPredicted RBP8.53□□□□□ -1.04
CCDC88A-206ENST00000430086 CCDC163A0A0D9SF12 145 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 OR14I1A6ND48 311 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 LRRC10BA6NIK2 292 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 HRKO00198 91 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 SRGAP3O43295 1099 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 MPOP05164 745 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 PDE6BP35913 854 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 RPL11P62913 178 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 SUMO1P63165 101 aaKnown RBP8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 MLANAQ16655 118 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 ADGRF1Q5T601 910 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 PRR23BQ6ZRT6 265 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 USP53Q70EK8 1073 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 KRTAP4-8Q9BYQ9 185 aa8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 ZNF552Q9H707 407 aaPredicted RBP8.52□□□□□ -1.05
CCDC88A-206ENST00000430086 A0A1W2PQJ5 194 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 MYO1BO43795 1136 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 CBX2Q14781 532 aaPredicted RBP8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 STYK1Q6J9G0 422 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 Q8N1Y9 231 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 PLEKHO2Q8TD55 490 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 ZFYVE21Q9BQ24 234 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 NSUN3Q9H649 340 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 MRPS23Q9Y3D9 190 aaKnown RBP8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 RWDD3Q9Y3V2 267 aa8.51□□□□□ -1.05
CCDC88A-206ENST00000430086 CYBBP04839 570 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 GLI4P10075 376 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 LCP1P13796 627 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 TACR1P25103 407 aa8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 YBX1P67809 324 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-206ENST00000430086 BICRALQ6AI39 1079 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms