RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 ALDH8A1Q9H2A2 487 aaPredicted RBP21.67■■□□□ 1.06
UPK3BP1-201ENST00000428678 INCENPQ9NQS7 918 aa21.67■■□□□ 1.06
UPK3BP1-201ENST00000428678 IL17RBQ9NRM6 502 aa21.67■■□□□ 1.06
UPK3BP1-201ENST00000428678 MYOGP15173 224 aa21.66■■□□□ 1.06
UPK3BP1-201ENST00000428678 TSPYL2Q9H2G4 693 aaPredicted RBP21.66■■□□□ 1.06
UPK3BP1-201ENST00000428678 PCDHA11Q9Y5I1 949 aa21.66■■□□□ 1.06
UPK3BP1-201ENST00000428678 RANBP6O60518 1105 aaKnown RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 ICAM1P05362 532 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 CYP2C9P11712 490 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 ATP2A2P16615 1042 aaKnown RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 BAATQ14032 418 aaPredicted RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 DUSP28Q4G0W2 176 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 PI4K2BQ8TCG2 481 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 MORC4Q8TE76 937 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 WDR11Q9BZH6 1224 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 TRMT13Q9NUP7 481 aaKnown RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 POLR3EQ9NVU0 708 aa21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 ADD3Q9UEY8 706 aaKnown RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 PRRC2BQ5JSZ5 2229 aaKnown RBP21.65■■□□□ 1.06
UPK3BP1-201ENST00000428678 OTUD7AQ8TE49 926 aaPredicted RBP21.64■■□□□ 1.05
UPK3BP1-201ENST00000428678 DCAF4Q8WV16 495 aa21.64■■□□□ 1.05
UPK3BP1-201ENST00000428678 TCF20Q9UGU0 1960 aaKnown RBP21.64■■□□□ 1.05
UPK3BP1-201ENST00000428678 TNKSO95271 1327 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 MYL3P08590 195 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 SUPT20HL2P0C7V6 817 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 SLC16A2P36021 539 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 ALDH5A1P51649 535 aaPredicted RBP21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 TTLL4Q14679 1199 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 TTBK2Q6IQ55 1244 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 DEFB128Q7Z7B8 93 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 VWCEQ96DN2 955 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 RANBP17Q9H2T7 1088 aaKnown RBP21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 GPHNQ9NQX3 736 aaPredicted RBP21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 RAPGEFL1Q9UHV5 662 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 SCN5AQ14524 2016 aa21.63■■□□□ 1.05
UPK3BP1-201ENST00000428678 PTPDC1A2A3K4 754 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 NFIBO00712 420 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 FOXP2O15409 715 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 PFKMP08237 780 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 CPT1AP50416 773 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 PURAQ00577 322 aaKnown RBP21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 FAM47CQ5HY64 1035 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 OR6J1Q8NGC5 347 aa21.62■■□□□ 1.05
UPK3BP1-201ENST00000428678 SKIV2LQ15477 1246 aaKnown RBP21.61■■□□□ 1.05
UPK3BP1-201ENST00000428678 TMEM67Q5HYA8 995 aa21.61■■□□□ 1.05
UPK3BP1-201ENST00000428678 SYDE2Q5VT97 1194 aa21.61■■□□□ 1.05
UPK3BP1-201ENST00000428678 MTG1Q9BT17 334 aaPredicted RBP21.61■■□□□ 1.05
UPK3BP1-201ENST00000428678 TOMM22Q9NS69 142 aa21.61■■□□□ 1.05
UPK3BP1-201ENST00000428678 FRMPD2Q68DX3 1309 aaPredicted RBP21.6■■□□□ 1.05
UPK3BP1-201ENST00000428678 CA3P07451 260 aa21.6■■□□□ 1.05
UPK3BP1-201ENST00000428678 BRDTQ58F21 947 aaPredicted RBP21.6■■□□□ 1.05
UPK3BP1-201ENST00000428678 SLC30A10Q6XR72 485 aa21.6■■□□□ 1.05
UPK3BP1-201ENST00000428678 GPCPD1Q9NPB8 672 aa21.6■■□□□ 1.05
UPK3BP1-201ENST00000428678 SCN10AQ9Y5Y9 1956 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 LOC102724159A0A0B4J2E5 919 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 ORC4O43929 436 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 ACTN1P12814 892 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 MX1P20591 662 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 CALML3P27482 149 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 NOVP48745 357 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 TFF2Q03403 129 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 PWP2Q15269 919 aaKnown RBP21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 NBPF20Q3BBV1 942 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 RRP12Q5JTH9 1297 aaKnown RBP21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 VPS53Q5VIR6 699 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 BTNL9Q6UXG8 535 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 PPP1R13LQ8WUF5 828 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 NECAB3Q96P71 396 aaPredicted RBP21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 ANAPC4Q9UJX5 808 aa21.59■■□□□ 1.05
UPK3BP1-201ENST00000428678 RAD50Q92878 1312 aa21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 RBM47A0AV96 593 aaKnown RBP21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 RFXAPO00287 272 aa21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 PDE4DQ08499 809 aa21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 PPP2R5BQ15173 497 aa21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 CERS4Q9HA82 394 aa21.58■■□□□ 1.05
UPK3BP1-201ENST00000428678 GTPBP6O43824 516 aaPredicted RBP21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 TOP1P11387 765 aaKnown RBP21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 RFC2P35250 354 aa21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 AAK1Q2M2I8 961 aa21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 RNF207Q6ZRF8 634 aa21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 RETREG2Q8NC44 543 aa21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 MPHOSPH6Q99547 160 aaKnown RBP21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 TMEM47Q9BQJ4 181 aa21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 FTOQ9C0B1 505 aaKnown RBP eCLIP21.57■■□□□ 1.04
UPK3BP1-201ENST00000428678 BMP1P13497 986 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 SCFD2Q8WU76 684 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 CLEC4DQ8WXI8 215 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 SLC9A7Q96T83 725 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 NOD1Q9Y239 953 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 MTCH2Q9Y6C9 303 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 TET1Q8NFU7 2136 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 TANC1Q9C0D5 1861 aa21.56■■□□□ 1.04
UPK3BP1-201ENST00000428678 NKRFO15226 690 aaKnown RBP eCLIP21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 KCNQ1P51787 676 aa21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 CHMP4BP1P59074 171 aa21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 NFRKBQ6P4R8 1299 aa21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 COPS5Q92905 334 aa21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 PCDHB15Q9Y5E8 787 aa21.55■■□□□ 1.04
UPK3BP1-201ENST00000428678 PITPNM1O00562 1244 aa21.54■■□□□ 1.04
UPK3BP1-201ENST00000428678 KPNA6O60684 536 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms