RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PYM1Q9BRP8 204 aaKnown RBP12□□□□□ -0.49
CUX1-205ENST00000425244 SRRTQ9BXP5 876 aaKnown RBP12□□□□□ -0.49
CUX1-205ENST00000425244 TMEM60Q9H2L4 133 aa12□□□□□ -0.49
CUX1-205ENST00000425244 TMOD2Q9NZR1 351 aa12□□□□□ -0.49
CUX1-205ENST00000425244 CYTH3O43739 400 aa12□□□□□ -0.49
CUX1-205ENST00000425244 H2AFXP16104 143 aaPredicted RBP12□□□□□ -0.49
CUX1-205ENST00000425244 UBA7P41226 1012 aa12□□□□□ -0.49
CUX1-205ENST00000425244 FXR1P51114 621 aaKnown RBP eCLIP12□□□□□ -0.49
CUX1-205ENST00000425244 TNIP1Q15025 636 aa12□□□□□ -0.49
CUX1-205ENST00000425244 SHROOM1Q2M3G4 852 aaPredicted RBP12□□□□□ -0.49
CUX1-205ENST00000425244 TBC1D10BQ4KMP7 808 aaPredicted RBP12□□□□□ -0.49
CUX1-205ENST00000425244 TMEM47Q9BQJ4 181 aa12□□□□□ -0.49
CUX1-205ENST00000425244 VPS33BQ9H267 617 aa12□□□□□ -0.49
CUX1-205ENST00000425244 ZSWIM4Q9H7M6 989 aa12□□□□□ -0.49
CUX1-205ENST00000425244 RWDD2AQ9UIY3 292 aa12□□□□□ -0.49
CUX1-205ENST00000425244 PCDHA6Q9UN73 950 aa12□□□□□ -0.49
CUX1-205ENST00000425244 PCDHA8Q9Y5H6 950 aa12□□□□□ -0.49
CUX1-205ENST00000425244 ZNF646O15015 1829 aaPredicted RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 KCNJ18B7U540 433 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 GYPCP04921 128 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 GMPSP49915 693 aaPredicted RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 GNAQP50148 359 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 PPP2R3AQ06190 1150 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 KCNJ12Q14500 433 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 ARL6IP4Q66PJ3 421 aaKnown RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 SH3BP5LQ7L8J4 393 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 C4orf32Q8N8J7 132 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 CSRNP1Q96S65 589 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 NUP88Q99567 741 aaPredicted RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 VAT1LQ9HCJ6 419 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 DISC1Q9NRI5 854 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 RMND1Q9NWS8 449 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 TRIM49BA6NDI0 452 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 AKR1B1P15121 316 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 PBX1P40424 430 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 PRCPP42785 496 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 COPB1P53618 953 aaKnown RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 ZNF658Q5TYW1 1059 aaPredicted RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 CDAN1Q8IWY9 1227 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 CCDC148Q8NFR7 591 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 CEP95Q96GE4 821 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 MRIQ9BWK5 157 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 MYOZ2Q9NPC6 264 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 SH3GLB2Q9NR46 395 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 ST7Q9NRC1 585 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 ARGLU1Q9NWB6 273 aaPredicted RBP11.99□□□□□ -0.49
CUX1-205ENST00000425244 BCCIPQ9P287 314 aaKnown RBP eCLIP11.99□□□□□ -0.49
CUX1-205ENST00000425244 ADGRG1Q9Y653 693 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 ZNF541Q9H0D2 1346 aa11.99□□□□□ -0.49
CUX1-205ENST00000425244 DDX60LQ5H9U9 1706 aaKnown RBP11.98□□□□□ -0.49
CUX1-205ENST00000425244 KLRF2D3W0D1 207 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 WNT10BO00744 389 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 NAPAP54920 295 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 CNGA4Q8IV77 575 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 MICALL2Q8IY33 904 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 AGBL3Q8NEM8 1001 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 KIFC2Q96AC6 838 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 ZNF70Q9UC06 446 aaPredicted RBP11.98□□□□□ -0.49
CUX1-205ENST00000425244 ROBO3Q96MS0 1386 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 EFCAB8A8MWE9 144 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 STXBP3O00186 592 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.493e-6■■■□□ 15.7
CUX1-205ENST00000425244 UBXN1Q04323 297 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 LETM2Q2VYF4 491 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 TCP11X2Q5H9J9 407 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 TMCO3Q6UWJ1 677 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 MIGA2Q7L4E1 593 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 ACRBPQ8NEB7 543 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 EEF2KMTQ96G04 330 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 TMEM39BQ9GZU3 492 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 MRFAP1Q9Y605 127 aa11.98□□□□□ -0.49
CUX1-205ENST00000425244 KIF5CO60282 957 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 GDF11O95390 407 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 MAP3K9P80192 1104 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 SPAG1Q07617 926 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 USP17L2Q6R6M4 530 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 ZNF771Q7L3S4 317 aaPredicted RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 LRRC47Q8N1G4 583 aaKnown RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 NAA15Q9BXJ9 866 aaKnown RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 IDI2Q9BXS1 227 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 BARHL2Q9NY43 387 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 PI4KBQ9UBF8 816 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 LIMA1Q9UHB6 759 aaKnown RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 CNOT7Q9UIV1 285 aaKnown RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 ASTN2O75129 1339 aaPredicted RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 FOCADQ5VW36 1801 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 RNF225M0QZC1 329 aaPredicted RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 SEC31AO94979 1220 aaKnown RBP11.97□□□□□ -0.49
CUX1-205ENST00000425244 SHMT1P34896 483 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 NAALADL2Q58DX5 795 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 ZNF569Q5MCW4 686 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 DNAJC18Q9H819 358 aa11.97□□□□□ -0.49
CUX1-205ENST00000425244 CCNT1O60563 726 aaKnown RBP11.96□□□□□ -0.49
CUX1-205ENST00000425244 LMNB1P20700 586 aa11.96□□□□□ -0.49
CUX1-205ENST00000425244 GABPAQ06546 454 aa11.96□□□□□ -0.49
CUX1-205ENST00000425244 BMS1Q14692 1282 aaKnown RBP11.96□□□□□ -0.49
CUX1-205ENST00000425244 CCDC178Q5BJE1 867 aa11.96□□□□□ -0.49
CUX1-205ENST00000425244 TAF3Q5VWG9 929 aa11.96□□□□□ -0.49
CUX1-205ENST00000425244 ANKS1AQ92625 1134 aa11.96□□□□□ -0.49
CUX1-205ENST00000425244 TRIM47Q96LD4 638 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms