RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 ZMYND12Q9H0C1 365 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 ZNF287Q9HBT7 754 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 SFI1A8K8P3 1242 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 CHMP2AO43633 222 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 GTF2F1P35269 517 aaKnown RBP eCLIP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 CERKLQ49MI3 558 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 CCDC174Q6PII3 467 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 P2RX7Q99572 595 aaKnown RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 FAM207AQ9NSI2 230 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 PCDHA1Q9Y5I3 950 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 DUSP10Q9Y6W6 482 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 TTC26A0AVF1 554 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 CTIFO43310 598 aaKnown RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 TTLL1O95922 423 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 PLEKP08567 350 aaPredicted RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 ARID5AQ03989 594 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 COA1Q9GZY4 146 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 EXOC1Q9NV70 894 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 MYH8P13535 1937 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 MYMKA6NI61 221 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 KLRC4O43908 158 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ADRA2BP18089 450 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 CASQ1P31415 396 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 LONP1P36776 959 aaKnown RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 MTIF2P46199 727 aaKnown RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 TBX2Q13207 712 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ZNF658Q5TYW1 1059 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 NLGN1Q8N2Q7 840 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ANKRD13CQ8N6S4 541 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 TBC1D22AQ8WUA7 517 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 CRAMP1Q96RY5 1269 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 TANGO6Q9C0B7 1094 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 PSTPIP2Q9H939 334 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 HDAC6Q9UBN7 1215 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 FAM198AQ9UFP1 575 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ZBTB39O15060 712 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 PPIP5K2O43314 1243 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 SRGAP2O75044 1071 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 PLCG2P16885 1265 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 GNA11P29992 359 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 KRT26Q7Z3Y9 468 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ARHGAP6O43182 974 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 NPR1P16066 1061 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 ERCC5P28715 1186 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 HOXA10P31260 410 aaPredicted RBP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 QRICH1Q2TAL8 776 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 PRR16Q569H4 304 aa13.38□□□□□ -0.27
PTPRN-204ENST00000423636 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.38□□□□□ -0.27
PTPRN-204ENST00000423636 POTEB3A0JP26 581 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 POTECB2RU33 542 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 H0YIN7 160 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 HLA-DOAP06340 250 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 CDKAL1Q5VV42 579 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 SLFN13Q68D06 897 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 POTEBQ6S5H4 581 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 MAEAQ7L5Y9 396 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 ACER1Q8TDN7 264 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 SMCR8Q8TEV9 937 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 CAPZA3Q96KX2 299 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 GDAP1L1Q96MZ0 367 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 TRIM9Q9C026 710 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 ONECUT3O60422 494 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 ZNF543Q08ER8 600 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 PRAMEF18Q5VWM3 479 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 KIAA0895Q8NCT3 520 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 NOC3LQ8WTT2 800 aaKnown RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 CCDC94Q9BW85 323 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 GLIS2Q9BZE0 524 aaPredicted RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 DDX25Q9UHL0 483 aaKnown RBP13.37□□□□□ -0.27
PTPRN-204ENST00000423636 KIAA1024Q9UPX6 916 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 SBF2Q86WG5 1849 aa13.37□□□□□ -0.27
PTPRN-204ENST00000423636 GAKO14976 1311 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 EPHB6O15197 1021 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 BMP15O95972 392 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 TRIM21P19474 475 aaKnown RBP13.36□□□□□ -0.27
PTPRN-204ENST00000423636 GRB10Q13322 594 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SYCP1Q15431 976 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SLC27A3Q5K4L6 730 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SLF2Q8IX21 1173 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 TRIML1Q8N9V2 468 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 ANKRD7Q92527 254 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 CSRNP1Q96S65 589 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 PODXL2Q9NZ53 605 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 RREB1Q92766 1687 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SORBS3O60504 671 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 RHOXF2BP0C7M4 288 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 PSMC6P62333 389 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 ICA1Q05084 483 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 GABPAQ06546 454 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SLC35F6Q8N357 371 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 MASTLQ96GX5 879 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 PNMA5Q96PV4 448 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 RHOXF2Q9BQY4 288 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 SPZ1Q9BXG8 430 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 ZMYND15Q9H091 742 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 KIAA1551Q9HCM1 1747 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 TAF1LQ8IZX4 1826 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 A0A1W2PRG0 241 aa13.36□□□□□ -0.27
PTPRN-204ENST00000423636 POTEFA5A3E0 1075 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms