RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 DHRS1Q96LJ7 313 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 ALPK1Q96QP1 1244 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 PCGF6Q9BYE7 350 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 ADAMTS10Q9H324 1103 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 LRRC7Q96NW7 1537 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 DIP2AQ14689 1571 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 SETBP1Q9Y6X0 1596 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 METP08581 1390 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 EPHX1P07099 455 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 LARP1BQ659C4 914 aaKnown RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 VPS37DQ86XT2 251 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 KLHL6Q8WZ60 621 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 C8orf37Q96NL8 207 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 HAUS7Q99871 368 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 LGR4Q9BXB1 951 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 C19orf44Q9H6X5 657 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 EBF1Q9UH73 591 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 TCFL5Q9UL49 500 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 ZNF214Q9UL59 606 aaPredicted RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 MYO5BQ9ULV0 1848 aa3.51□□□□□ -1.85
VPS13A-208ENST00000423463 NKTRP30414 1462 aaKnown RBP3.51□□□□□ -1.85
VPS13A-208ENST00000423463 SIGLEC6O43699 453 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ZC3H6P61129 1189 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 VHLLQ6RSH7 139 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 C6orf15Q6UXA7 325 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 TMPRSS7Q7RTY8 843 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 MICAL1Q8TDZ2 1067 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 FGD4Q96M96 766 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 SIN3AQ96ST3 1273 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 DSCC1Q9BVC3 393 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 NOL6Q9H6R4 1146 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 CHST7Q9NS84 486 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 TMEM59LQ9UK28 342 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ZNF451Q9Y4E5 1061 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 PTPRUQ92729 1446 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ABCC11Q96J66 1382 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 H0Y8X5 98 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 PAPLNO95428 1278 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 RPL10P27635 214 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 TRHRP34981 398 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 GALK1P51570 392 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 BBS9Q3SYG4 887 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 NOL9Q5SY16 702 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 FYB2Q5VWT5 728 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 MCTP1Q6DN14 999 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 KIAA1211LQ6NV74 962 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 C7orf61Q8IZ16 206 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 HNRNPLLQ8WVV9 542 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 PHAXQ9H814 394 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 STRIP2Q9ULQ0 834 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 MYOM2P54296 1465 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 NRXN1Q9ULB1 1477 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 LRPPRCP42704 1394 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 MSH6P52701 1360 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 NWD1Q149M9 1564 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 PIK3C2GO75747 1445 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 SYPP08247 313 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 CD247P20963 164 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ZNF445P59923 1031 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 TEKQ02763 1124 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 PPP2R5DQ14738 602 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 TMEM132EQ6IEE7 984 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 USHBP1Q8N6Y0 703 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 C19orf47Q8N9M1 422 aaKnown RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 SYTL5Q8TDW5 730 aaPredicted RBP3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ZDHHC15Q96MV8 337 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 GP6Q9HCN6 339 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 APEX2Q9UBZ4 518 aa3.5□□□□□ -1.85
VPS13A-208ENST00000423463 ALKQ9UM73 1620 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 TMEM82A0PJX8 343 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 USP2O75604 605 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ZGLP1P0C6A0 271 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ATF3P18847 181 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 SLC7A5Q01650 507 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 TIGD5Q53EQ6 642 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 WAPLQ7Z5K2 1190 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 FIBCD1Q8N539 461 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ZNF655Q8N720 491 aaPredicted RBP3.49□□□□□ -1.85
VPS13A-208ENST00000423463 OR6P1Q8NGX9 317 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ACTR10Q9NZ32 417 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 STK26Q9P289 416 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CTNND2Q9UQB3 1225 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CLSPNQ9HAW4 1339 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 PPLO60437 1756 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 NRXN3Q9Y4C0 1643 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 PRAG1Q86YV5 1406 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CASP7P55210 303 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ADAT2Q7Z6V5 191 aaKnown RBP3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CELF2-AS1Q8N7Q2 184 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 DAGLBQ8NCG7 672 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 PPP1R14AQ96A00 147 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CDADC1Q9BWV3 514 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 ST7Q9NRC1 585 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 AP5S1Q9NUS5 200 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 LMCD1Q9NZU5 365 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 STRCP1A6NGW2 1772 aa3.49□□□□□ -1.85
VPS13A-208ENST00000423463 CHD2O14647 1828 aaKnown RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 FAM135BQ49AJ0 1406 aa3.48□□□□□ -1.85
VPS13A-208ENST00000423463 YTHDC2Q9H6S0 1430 aaKnown RBP3.48□□□□□ -1.85
VPS13A-208ENST00000423463 EFEMP2O95967 443 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms