RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SPRED3Q2MJR0 410 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 PPP4R3AQ6IN85 833 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 CYB5D1Q6P9G0 228 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 LCORLQ8N3X6 602 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 CSGALNACT2Q8N6G5 542 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 MAGEC3Q8TD91 643 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 DISC1Q9NRI5 854 aa11.88□□□□□ -0.51
USP54-204ENST00000422491 DDX20Q9UHI6 824 aaKnown RBP11.88□□□□□ -0.51
USP54-204ENST00000422491 E7EVH7 732 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 HEXIM1O94992 359 aaKnown RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 UQCRFS1P1P0C7P4 283 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 GCFC2P16383 781 aaKnown RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 ITGA6P23229 1130 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 MCM7P33993 719 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 LONP1P36776 959 aaKnown RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 ATP2B2Q01814 1243 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 TYW1BQ6NUM6 668 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 FUKQ8N0W3 1084 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 CCDC155Q8N6L0 562 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 EEF2KMTQ96G04 330 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 MS4A14Q96JA4 679 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 CNOT6LQ96LI5 555 aaKnown RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 OSBPL7Q9BZF2 842 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 RNF41Q9H4P4 317 aaPredicted RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 EPB41L5Q9HCM4 733 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 COL22A1Q8NFW1 1626 aaPredicted RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 KCPQ6ZWJ8 1503 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 NKRFO15226 690 aaKnown RBP eCLIP11.87□□□□□ -0.51
USP54-204ENST00000422491 PJA2O43164 708 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 PDE8BO95263 885 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 CDR1P51861 262 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 SNCBQ16143 134 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 KLHDC7AQ5VTJ3 777 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 ARL6IP4Q66PJ3 421 aaKnown RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 PIK3AP1Q6ZUJ8 805 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 PARP9Q8IXQ6 854 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 C4orf32Q8N8J7 132 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 ZBTB38Q8NAP3 1195 aaPredicted RBP11.87□□□□□ -0.51
USP54-204ENST00000422491 FAXDC2Q96IV6 333 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 NACAP1Q9BZK3 213 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 CENPHQ9H3R5 247 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 GREM2Q9H772 168 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 PNPLA7Q6ZV29 1317 aa11.87□□□□□ -0.51
USP54-204ENST00000422491 DNM1LO00429 736 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 PDHBP11177 359 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 GUCY2DQ02846 1103 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 MAP3K12Q12852 859 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 C2CD5Q86YS7 1000 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SYNE4Q8N205 404 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 ENAHQ8N8S7 591 aaPredicted RBP11.86□□□□□ -0.51
USP54-204ENST00000422491 C3orf20Q8ND61 904 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 DHTKD1Q96HY7 919 aaPredicted RBP11.86□□□□□ -0.51
USP54-204ENST00000422491 CCDC114Q96M63 670 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 PCMTD1Q96MG8 357 aaPredicted RBP11.86□□□□□ -0.51
USP54-204ENST00000422491 SLC4A4Q9Y6R1 1079 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 ADAMTS3O15072 1205 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 GNAT2P19087 354 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 EIF4A3P38919 411 aaKnown RBP11.86□□□□□ -0.51
USP54-204ENST00000422491 GUCY2FP51841 1108 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SATB1Q01826 763 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SEMA3FQ13275 785 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 CFAP221Q4G0U5 840 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 CCDC121Q6ZUS5 278 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SPATA5Q8NB90 893 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 WHAMMQ8TF30 809 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 CASKIN2Q8WXE0 1202 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 IFT81Q8WYA0 676 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 MTMR8Q96EF0 704 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SGSM3Q96HU1 749 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 NOC4LQ9BVI4 516 aaKnown RBP11.86□□□□□ -0.51
USP54-204ENST00000422491 TMBIM4Q9HC24 238 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 CNNM1Q9NRU3 951 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 RNF14Q9UBS8 474 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 SLC12A6Q9UHW9 1150 aa11.86□□□□□ -0.51
USP54-204ENST00000422491 GOLGA6L7A0A1B0GV03 622 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 EPHB6O15197 1021 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 MYL1P05976 194 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 ANKRD20A8PQ5CZ79 823 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 IQCDQ96DY2 449 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 PPANQ9NQ55 473 aaKnown RBP11.85□□□□□ -0.51
USP54-204ENST00000422491 TPX2Q9ULW0 747 aaKnown RBP11.85□□□□□ -0.51
USP54-204ENST00000422491 CCNE1P24864 410 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 HSPA9P38646 679 aaKnown RBP11.85□□□□□ -0.51
USP54-204ENST00000422491 TROAPQ12815 778 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 CRYMQ14894 314 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 ANKRD40Q6AI12 368 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 CCDC50Q8IVM0 306 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 P2RX5Q93086 422 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 KBTBD4Q9NVX7 518 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 RBM28Q9NW13 759 aaKnown RBP11.85□□□□□ -0.51
USP54-204ENST00000422491 PLAAQ9Y263 795 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 SIK3Q9Y2K2 1263 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 CNTNAP5Q8WYK1 1306 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 TNS3Q68CZ2 1445 aa11.85□□□□□ -0.51
USP54-204ENST00000422491 GMNCA6NCL1 334 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 TRAPPC3O43617 180 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 MTIF2P46199 727 aaKnown RBP11.84□□□□□ -0.51
USP54-204ENST00000422491 RASGRF1Q13972 1273 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 TRADDQ15628 312 aa11.84□□□□□ -0.51
USP54-204ENST00000422491 TLDC1Q6P9B6 456 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms