RNA–Protein interactions for RNA: ENST00000421712.1

BRAT1-202, Transcript of BRCA1 associated ATM activator 1, humanhuman

TSL 3

Gene BRAT1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-202ENST00000421712 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.2■□□□□ 0.5
BRAT1-202ENST00000421712 ALDH8A1Q9H2A2 487 aaPredicted RBP18.2■□□□□ 0.5
BRAT1-202ENST00000421712 SLKQ9H2G2 1235 aaPredicted RBP18.2■□□□□ 0.5
BRAT1-202ENST00000421712 NCOA5Q9HCD5 579 aaKnown RBP18.2■□□□□ 0.5
BRAT1-202ENST00000421712 ADD3Q9UEY8 706 aaKnown RBP18.2■□□□□ 0.5
BRAT1-202ENST00000421712 CNTNAP5Q8WYK1 1306 aa18.2■□□□□ 0.5
BRAT1-202ENST00000421712 POTEFA5A3E0 1075 aa18.19■□□□□ 0.5
BRAT1-202ENST00000421712 ASB14A6NK59 587 aa18.19■□□□□ 0.5
BRAT1-202ENST00000421712 TFRCP02786 760 aaKnown RBP18.19■□□□□ 0.5
BRAT1-202ENST00000421712 RBM25P49756 843 aaKnown RBP18.19■□□□□ 0.5
BRAT1-202ENST00000421712 MAP3K21Q5TCX8 1036 aa18.19■□□□□ 0.5
BRAT1-202ENST00000421712 CPLX2Q6PUV4 134 aaKnown RBP18.19■□□□□ 0.5
BRAT1-202ENST00000421712 MPHOSPH6Q99547 160 aaKnown RBP18.19■□□□□ 0.5
BRAT1-202ENST00000421712 GCOM1H8Y6P7 765 aaPredicted RBP18.18■□□□□ 0.5
BRAT1-202ENST00000421712 PPFIA3O75145 1194 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 GJB1P08034 283 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 POLR2MP0CAP2 368 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 ARMCX2Q7L311 632 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 BACH2Q9BYV9 841 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.18■□□□□ 0.5
BRAT1-202ENST00000421712 ZHX1Q9UKY1 873 aaPredicted RBP18.18■□□□□ 0.5
BRAT1-202ENST00000421712 TPCN1Q9ULQ1 816 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 SYNGAP1Q96PV0 1343 aa18.18■□□□□ 0.5
BRAT1-202ENST00000421712 B4DLN1 442 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 EN2P19622 333 aaPredicted RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 HOXA13P31271 388 aaPredicted RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 ALDH5A1P51649 535 aaPredicted RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 MRPL12P52815 198 aaKnown RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 FUT2Q10981 343 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 MAMDC4Q6UXC1 1216 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 TRPV1Q8NER1 839 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 SYTL5Q8TDW5 730 aaPredicted RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 GPKOWQ92917 476 aaPredicted RBP eCLIP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 CUL5Q93034 780 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 PHKBQ93100 1093 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 FGD4Q96M96 766 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 SLC26A6Q9BXS9 759 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 MAF1Q9H063 256 aa18.17■□□□□ 0.5
BRAT1-202ENST00000421712 PAK6Q9NQU5 681 aaPredicted RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 KIAA0100Q14667 2235 aaKnown RBP18.17■□□□□ 0.5
BRAT1-202ENST00000421712 SGPL1O95470 568 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 SNAI1O95863 264 aaPredicted RBP18.16■□□□□ 0.5
BRAT1-202ENST00000421712 CYBAP13498 195 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 NAPAP54920 295 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 SSRP1Q08945 709 aaKnown RBP18.16■□□□□ 0.5
BRAT1-202ENST00000421712 ARHGEF16Q5VV41 709 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 EEPD1Q7L9B9 569 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 FCHSD1Q86WN1 690 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 TRIM22Q8IYM9 498 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 SAMD3Q8N6K7 520 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 DNERQ8NFT8 737 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 U2AF1L4Q8WU68 220 aaKnown RBP18.16■□□□□ 0.5
BRAT1-202ENST00000421712 TAAR1Q96RJ0 339 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 RMDN3Q96TC7 470 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 MAP3K20Q9NYL2 800 aaKnown RBP18.16■□□□□ 0.5
BRAT1-202ENST00000421712 RBM27Q9P2N5 1060 aaKnown RBP18.16■□□□□ 0.5
BRAT1-202ENST00000421712 NRBP1Q9UHY1 535 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 NID2Q14112 1375 aa18.16■□□□□ 0.5
BRAT1-202ENST00000421712 OPLAHO14841 1288 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 PRPF3O43395 683 aaKnown RBP18.15■□□□□ 0.5
BRAT1-202ENST00000421712 IGHA2P01877 340 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 GJA8P48165 433 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 PDE4DQ08499 809 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 ACVR2BQ13705 512 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 ANO1Q5XXA6 986 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 SMARCC2Q8TAQ2 1214 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 NSUN6Q8TEA1 469 aaKnown RBP18.15■□□□□ 0.5
BRAT1-202ENST00000421712 KIF2CQ99661 725 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 ABHD16BQ9H3Z7 469 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 PSTPIP2Q9H939 334 aa18.15■□□□□ 0.5
BRAT1-202ENST00000421712 DDX20Q9UHI6 824 aaKnown RBP18.15■□□□□ 0.5
BRAT1-202ENST00000421712 DDX49Q9Y6V7 483 aaKnown RBP18.15■□□□□ 0.5
BRAT1-202ENST00000421712 MCM3APO60318 1980 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 SEPT4O43236 478 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 MSCO60682 206 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 PFKFB2O60825 505 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 MYCNP04198 464 aaPredicted RBP18.14■□□□□ 0.49
BRAT1-202ENST00000421712 IFNAR1P17181 557 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 HSD17B4P51659 736 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 SCRN1Q12765 414 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 RABEP1Q15276 862 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 WWC2Q6AWC2 1192 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 NECAB1Q8N987 351 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 TBC1D32Q96NH3 1257 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 COL20A1Q9P218 1284 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 ASTN1O14525 1302 aa18.14■□□□□ 0.49
BRAT1-202ENST00000421712 CDKL5O76039 1030 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 ZNF865P0CJ78 1059 aaPredicted RBP18.13■□□□□ 0.49
BRAT1-202ENST00000421712 SCG2P13521 617 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 EIF2AK2P19525 551 aaKnown RBP18.13■□□□□ 0.49
BRAT1-202ENST00000421712 NTRK3Q16288 839 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 ME3Q16798 604 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 PFKFB3Q16875 520 aaPredicted RBP18.13■□□□□ 0.49
BRAT1-202ENST00000421712 RNF26Q9BY78 433 aaPredicted RBP18.13■□□□□ 0.49
BRAT1-202ENST00000421712 FAM184BQ9ULE4 1060 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 LIMCH1Q9UPQ0 1083 aa18.13■□□□□ 0.49
BRAT1-202ENST00000421712 LOC102724159A0A0B4J2E5 919 aa18.12■□□□□ 0.49
BRAT1-202ENST00000421712 hCG_1984214I3L0E3 225 aa18.12■□□□□ 0.49
BRAT1-202ENST00000421712 STXBP3O00186 592 aa18.12■□□□□ 0.49
BRAT1-202ENST00000421712 ST18O60284 1047 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms