RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 STRIP1Q5VSL9 837 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 RSPH3Q86UC2 560 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 NEK9Q8TD19 979 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 IQCGQ9H095 443 aaKnown RBP13.21□□□□□ -0.3
PTPRF-205ENST00000414879 HOXC10Q9NYD6 342 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 TRPC6Q9Y210 931 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 GAS8O95995 478 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 TERF1P54274 439 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 PPP4R3CPQ6ZMV5 832 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 ATG9AQ7Z3C6 839 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 FAM84BQ96KN1 310 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 PRPF6O94906 941 aaKnown RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 ATP5DP30049 168 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 KRT222Q8N1A0 295 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 PIGSQ96S52 555 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 GINM1Q9NU53 330 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 ZEB2O60315 1214 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 TBCKQ8TEA7 893 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 ABCB11O95342 1321 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 SLC26A4O43511 780 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 C21orf2O43822 256 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 STK10O94804 968 aaKnown RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 HARSP12081 509 aaKnown RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 KCNQ4P56696 695 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 CFAP58Q5T655 872 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 FAM102BQ5T8I3 360 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 MB21D2Q8IYB1 491 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 SYNE4Q8N205 404 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 NEDD1Q8NHV4 660 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 ZNF830Q96NB3 372 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-205ENST00000414879 CLIC4Q9Y696 253 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 KIF1AQ12756 1690 aa13.2□□□□□ -0.3
PTPRF-205ENST00000414879 RESTQ13127 1097 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 PFKFB3Q16875 520 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 TDRD7Q8NHU6 1098 aaKnown RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 IPO4Q8TEX9 1081 aaKnown RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 SLC7A3Q8WY07 619 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 BCCIPQ9P287 314 aaKnown RBP eCLIP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 ARHGEF37A1IGU5 675 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 K7ENM7 598 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 ZBTB5O15062 677 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 NDUFA8P51970 172 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 POLGP54098 1239 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 YARSP54577 528 aaKnown RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 GRM4Q14833 912 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 SURF1Q15526 300 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 SYT10Q6XYQ8 523 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 CMTR1Q8N1G2 835 aaKnown RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 TMX1Q9H3N1 280 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 MAPK8IP1Q9UQF2 711 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 COL3A1P02461 1466 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 NELFCDQ8IXH7 590 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 SH3RF3Q8TEJ3 882 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 BLZF1Q9H2G9 400 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 KCNQ2O43526 872 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 TNNI1P19237 187 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 KARSQ15046 597 aaKnown RBP13.19□□□□□ -0.3
PTPRF-205ENST00000414879 C1orf112Q9NSG2 853 aa13.19□□□□□ -0.3
PTPRF-205ENST00000414879 USP17L5A8MUK1 530 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 ENTPD3O75355 529 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 JAK3P52333 1124 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 PPP1R7Q15435 360 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 ZNF658Q5TYW1 1059 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 HHIPL2Q6UWX4 724 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 TRIM58Q8NG06 486 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 XRN1Q8IZH2 1706 aaKnown RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 DPP9Q86TI2 863 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 FAM20AQ96MK3 541 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 ACCSQ96QU6 501 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 NTSR2O95665 410 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 PRDX5P30044 214 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 GPSM2P81274 684 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 HDLBPQ00341 1268 aaKnown RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 POLR3GO15318 223 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 PSAPP07602 524 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 POLR2BP30876 1174 aaKnown RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 HSPA1LP34931 641 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 FKBP3Q00688 224 aaKnown RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 ADAM9Q13443 819 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 XPO4Q9C0E2 1151 aaKnown RBP13.18□□□□□ -0.3
PTPRF-205ENST00000414879 AP5M1Q9H0R1 490 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 HAUS4Q9H6D7 363 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 KIAA1024Q9UPX6 916 aa13.18□□□□□ -0.3
PTPRF-205ENST00000414879 TOPAZ1Q8N9V7 1692 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 A0A1W2PRG0 241 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ARMCX5Q6P1M9 558 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 KCTD1Q719H9 257 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 FAM167AQ96KS9 214 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 INCENPQ9NQS7 918 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 CTTNBP2NLQ9P2B4 639 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 IQCA1LA6NCM1 817 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 PALM3A6NDB9 673 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-205ENST00000414879 SLC10A5Q5PT55 438 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 PRR5LQ6MZQ0 368 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 TRIM11Q96F44 468 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 PKNOX2Q96KN3 472 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ZSWIM4Q9H7M6 989 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 TMEM110-MUSTN1A8MSY1 372 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 GDF11O95390 407 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 IVLP07476 585 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms