RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SOWAHBA6NEL2 793 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 TNRC18O15417 2968 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 MAFGO15525 162 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 EIF3JO75822 258 aaKnown RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 EDNRBP24530 442 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 HSPA4P34932 840 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 MNX1P50219 401 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 ALDH5A1P51649 535 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 RPS6P62753 249 aaKnown RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 BAATQ14032 418 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 SNX17Q15036 470 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 LRRC41Q15345 812 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 STXBP2Q15833 593 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 CDC37Q16543 378 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 CCDC144BQ3MJ40 725 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 MUM1L1Q5H9M0 696 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 SLC39A5Q6ZMH5 540 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 NFXL1Q6ZNB6 911 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 STOX1Q6ZVD7 989 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 ZNF654Q8IZM8 581 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 FANCBQ8NB91 859 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 KLHDC9Q8NEP7 349 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 TRPV1Q8NER1 839 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 SCFD2Q8WU76 684 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 RRP36Q96EU6 259 aaKnown RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 GLT1D1Q96MS3 346 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 TM6SF1Q9BZW5 370 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 SENP6Q9GZR1 1112 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 UBA5Q9GZZ9 404 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 LY9Q9HBG7 655 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 PRKAG2Q9UGJ0 569 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 SEC63Q9UGP8 760 aaKnown RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 MTMR7Q9Y216 660 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 PCDHA1Q9Y5I3 950 aa7.41□□□□□ -1.22
USP54-202ENST00000413442 FRMPD2Q68DX3 1309 aaPredicted RBP7.41□□□□□ -1.22
USP54-202ENST00000413442 HTTP42858 3142 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 PIK3CDO00329 1044 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 SH2B2O14492 632 aaPredicted RBP7.4□□□□□ -1.22
USP54-202ENST00000413442 GOLGA8HP0CJ92 632 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 CPT1AP50416 773 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 HSD17B4P51659 736 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 EVCP57679 992 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 ANAPC15P60006 121 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 CNTN2Q02246 1040 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 PDE4DQ08499 809 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 TTLL4Q14679 1199 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 QRICH1Q2TAL8 776 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 DUSP28Q4G0W2 176 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 GNASQ5JWF2 1037 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 FAM43BQ6ZT52 329 aaPredicted RBP7.4□□□□□ -1.22
USP54-202ENST00000413442 CUL5Q93034 780 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 KATNBL1Q9H079 304 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 ALDH8A1Q9H2A2 487 aaPredicted RBP7.4□□□□□ -1.22
USP54-202ENST00000413442 VAT1LQ9HCJ6 419 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 HOMER2Q9NSB8 354 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 POLR3EQ9NVU0 708 aa7.4□□□□□ -1.22
USP54-202ENST00000413442 GNEQ9Y223 722 aaKnown RBP7.4□□□□□ -1.22
USP54-202ENST00000413442 PDE4DIPQ5VU43 2346 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 KIAA1217Q5T5P2 1943 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 DCDC2CA8MYV0 355 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 GCOM1H8Y6P7 765 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 TLR3O15455 904 aaKnown RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 ADAMTS4O75173 837 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 FOSP01100 380 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 SUPT20HL2P0C7V6 817 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 POLR2MP0CAP2 368 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 ACLYP53396 1101 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 ANTXR2P58335 489 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 FGD1P98174 961 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 PTPN11Q06124 597 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 PRAMEF19Q5SWL8 479 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 ARHGEF16Q5VV41 709 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 CCSAPQ6IQ19 270 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 GPR153Q6NV75 609 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 TAPT1Q6NXT6 567 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 BLOC1S2Q6QNY1 142 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 ANKRD33Q7Z3H0 272 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 STAG2Q8N3U4 1231 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 GIMAP8Q8ND71 665 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 CCDC12Q8WUD4 166 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 FGD4Q96M96 766 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 RMDN3Q96TC7 470 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 AGXT2Q9BYV1 514 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 EHMT1Q9H9B1 1298 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 ZHX1Q9UKY1 873 aaPredicted RBP7.39□□□□□ -1.23
USP54-202ENST00000413442 MCM3APO60318 1980 aa7.39□□□□□ -1.23
USP54-202ENST00000413442 H0YGN5 161 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 NFIBO00712 420 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 ZBTB43O43298 467 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 PPFIA4O75335 1185 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 CFBP00751 764 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 NR3C2P08235 984 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 C6orf222P0C671 652 aaPredicted RBP7.38□□□□□ -1.23
USP54-202ENST00000413442 CALML3P27482 149 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 ADCYAP1R1P41586 468 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 CDK7P50613 346 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 LAMC2Q13753 1193 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 ANKRD1Q15327 319 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 KCNA10Q16322 511 aa7.38□□□□□ -1.23
USP54-202ENST00000413442 GNPTABQ3T906 1256 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms