RNA–Protein interactions for RNA: ENST00000410517.1

RNU6-1140P-201, Transcript of RNA, U6 small nuclear 1140, pseudogene, humanhuman

BASIC

Gene RNU6-1140P, Length 106 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1140P-201ENST00000410517 CDK8P49336 464 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 NCAPHQ15003 741 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PPP2R5EQ16537 467 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 INTS3Q68E01 1043 aaKnown RBP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ANKS3Q6ZW76 656 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 WAPLQ7Z5K2 1190 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CRACR2BQ8N4Y2 399 aaPredicted RBP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 DNAJB8Q8NHS0 232 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 FNIP1Q8TF40 1166 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZNF526Q8TF50 670 aaPredicted RBP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 MAP6Q96JE9 813 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PLCD4Q9BRC7 762 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PRDM14Q9GZV8 571 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PHAXQ9H814 394 aaKnown RBP3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZNF408Q9H9D4 720 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 REV1Q9UBZ9 1251 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ST6GALNAC2Q9UJ37 374 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CEP131Q9UPN4 1083 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZNF281Q9Y2X9 895 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 WDR62O43379 1518 aa3.8□□□□□ -1.8
RNU6-1140P-201ENST00000410517 IQCA1LA6NCM1 817 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 LRRN2O75325 713 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 GBP1P32455 592 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ARL4AP40617 200 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CASP7P55210 303 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 RAB33AQ14088 237 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 NLRC3Q7RTR2 1065 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 MRPL41Q8IXM3 137 aaKnown RBP3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SLFN12Q8IYM2 578 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CCDC74BQ96LY2 380 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SRPK1Q96SB4 655 aaKnown RBP3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 EPN3Q9H201 632 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZSWIM4Q9H7M6 989 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 TJP2Q9UDY2 1190 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 KLHL3Q9UH77 587 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PPT2Q9UMR5 302 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 TNFRSF18Q9Y5U5 241 aa3.79□□□□□ -1.8
RNU6-1140P-201ENST00000410517 GFRA2O00451 464 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 TNFRSF10CO14798 259 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PLA2G1BP04054 148 aaKnown RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 MSL3P1P0C860 447 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CRKP46108 304 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZNF143P52747 638 aaPredicted RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 RTP1P59025 263 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 KIR3DS1Q14943 382 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SMN1Q16637 294 aaKnown RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CLEC16AQ2KHT3 1053 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CDCP2Q5VXM1 449 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CCDC81Q6ZN84 652 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 DPH6Q7L8W6 267 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 EEPD1Q7L9B9 569 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SAPCD2Q86UD0 394 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 MCATQ8IVS2 390 aaKnown RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CYB5D2Q8WUJ1 264 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ZNF669Q96BR6 464 aaPredicted RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SHDQ96IW2 340 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 HHIPL1Q96JK4 782 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 TMEM87BQ96K49 555 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 IPO9Q96P70 1041 aaKnown RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 ASCC2Q9H1I8 757 aaPredicted RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 SLKQ9H2G2 1235 aaPredicted RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 TSC22D4Q9Y3Q8 395 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 MRVI1Q9Y6F6 885 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 PMF1-BGLAPU3KQ54 211 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 CEP164Q9UPV0 1460 aa3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 RSF1Q96T23 1441 aaPredicted RBP3.78□□□□□ -1.8
RNU6-1140P-201ENST00000410517 NESP48681 1621 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 IRS2Q9Y4H2 1338 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 SHISA3A0PJX4 238 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 SMAD7O15105 426 aaKnown RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CLEC3AO75596 197 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 DDAH1O94760 285 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 PLATP00750 562 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 NME1P15531 152 aaKnown RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 TGFB2P61812 414 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 ZNF200P98182 395 aaPredicted RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CLCQ05315 142 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 DDR2Q16832 855 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 TBC1D10BQ4KMP7 808 aaPredicted RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 ZC3H12BQ5HYM0 836 aaKnown RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 LARP1BQ659C4 914 aaKnown RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 OVOS1Q6IE37 1185 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 LRRC47Q8N1G4 583 aaKnown RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 ST13P5Q8NFI4 369 aaPredicted RBP3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 FBXO27Q8NI29 283 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CCDC113Q9H0I3 377 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 GBP3Q9H0R5 595 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CNNM2Q9H8M5 875 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 SMARCA4P51532 1647 aa3.77□□□□□ -1.81
RNU6-1140P-201ENST00000410517 ABCC8Q09428 1581 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 SH3D21A4FU49 640 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 FOXO4P98177 505 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 SLC7A5Q01650 507 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 LAPTM5Q13571 262 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 TCEAL1Q15170 157 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CDSNQ15517 529 aa3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 TARBP2Q15633 366 aaKnown RBP3.76□□□□□ -1.81
RNU6-1140P-201ENST00000410517 CCDC144BQ3MJ40 725 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms