RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 FGD1P98174 961 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 ANO1Q5XXA6 986 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 RAB11FIP4Q86YS3 637 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 FBXL16Q8N461 479 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 SRBD1Q8N5C6 995 aaKnown RBP24.07■■□□□ 1.44
VSX1-204ENST00000409958 DNERQ8NFT8 737 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 HTATIP2Q9BUP3 242 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 KATNBL1Q9H079 304 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 BRPF3Q9ULD4 1205 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 ZBTB43O43298 467 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 PLEKHA8P1O95397 391 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 RCAN1P53805 252 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 Q6ZUG5 572 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 ARRDC4Q8NCT1 418 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 TBC1D5Q92609 795 aa24.06■■□□□ 1.44
VSX1-204ENST00000409958 RRP36Q96EU6 259 aaKnown RBP24.06■■□□□ 1.44
VSX1-204ENST00000409958 RBM28Q9NW13 759 aaKnown RBP24.06■■□□□ 1.44
VSX1-204ENST00000409958 KLF18A0A0U1RQI7 1052 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 GHRHRQ02643 423 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 TMTC3Q6ZXV5 915 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 SYTL5Q8TDW5 730 aaPredicted RBP24.05■■□□□ 1.44
VSX1-204ENST00000409958 AGXT2Q9BYV1 514 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 TM6SF1Q9BZW5 370 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 C11orf49Q9H6J7 331 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 ZSWIM6Q9HCJ5 1215 aa24.05■■□□□ 1.44
VSX1-204ENST00000409958 DNM1LO00429 736 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 OPLAHO14841 1288 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 CCDC144BQ3MJ40 725 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 RUFY3Q7L099 469 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 SAMD3Q8N6K7 520 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 PIBF1Q8WXW3 757 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 MPHOSPH6Q99547 160 aaKnown RBP24.04■■□□□ 1.44
VSX1-204ENST00000409958 XPNPEP3Q9NQH7 507 aa24.04■■□□□ 1.44
VSX1-204ENST00000409958 MAP3K20Q9NYL2 800 aaKnown RBP24.04■■□□□ 1.44
VSX1-204ENST00000409958 COL6A1P12109 1028 aa24.03■■□□□ 1.44
VSX1-204ENST00000409958 RTN1Q16799 776 aa24.03■■□□□ 1.44
VSX1-204ENST00000409958 CMTR1Q8N1G2 835 aaKnown RBP24.03■■□□□ 1.44
VSX1-204ENST00000409958 BRF1Q92994 677 aa24.03■■□□□ 1.44
VSX1-204ENST00000409958 VTA1Q9NP79 307 aa24.03■■□□□ 1.44
VSX1-204ENST00000409958 SEC63Q9UGP8 760 aaKnown RBP24.03■■□□□ 1.44
VSX1-204ENST00000409958 DDX49Q9Y6V7 483 aaKnown RBP24.03■■□□□ 1.44
VSX1-204ENST00000409958 B4DLN1 442 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 DUSP11O75319 330 aaKnown RBP24.02■■□□□ 1.44
VSX1-204ENST00000409958 CFBP00751 764 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 EDNRBP24530 442 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 HSD17B4P51659 736 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 MRPL12P52815 198 aaKnown RBP24.02■■□□□ 1.44
VSX1-204ENST00000409958 PPP2R5BQ15173 497 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 CYP46A1Q9Y6A2 500 aa24.02■■□□□ 1.44
VSX1-204ENST00000409958 GOLGA8AA7E2F4 631 aa24.01■■□□□ 1.43
VSX1-204ENST00000409958 GOLGA8BA8MQT2 603 aa24.01■■□□□ 1.43
VSX1-204ENST00000409958 APOBRQ0VD83 1088 aa24.01■■□□□ 1.43
VSX1-204ENST00000409958 LRRC41Q15345 812 aa24.01■■□□□ 1.43
VSX1-204ENST00000409958 GJC2Q5T442 439 aaPredicted RBP24.01■■□□□ 1.43
VSX1-204ENST00000409958 PRPF38BQ5VTL8 546 aaKnown RBP24.01■■□□□ 1.43
VSX1-204ENST00000409958 COL20A1Q9P218 1284 aa24.01■■□□□ 1.43
VSX1-204ENST00000409958 KBTBD13C9JR72 458 aa24■■□□□ 1.43
VSX1-204ENST00000409958 ANAPC15P60006 121 aa24■■□□□ 1.43
VSX1-204ENST00000409958 PDE4DQ08499 809 aa24■■□□□ 1.43
VSX1-204ENST00000409958 TAPT1Q6NXT6 567 aa24■■□□□ 1.43
VSX1-204ENST00000409958 EEPD1Q7L9B9 569 aa24■■□□□ 1.43
VSX1-204ENST00000409958 RNF180Q86T96 592 aa24■■□□□ 1.43
VSX1-204ENST00000409958 FBXO16Q8IX29 292 aaPredicted RBP24■■□□□ 1.43
VSX1-204ENST00000409958 CCDC82Q8N4S0 544 aa24■■□□□ 1.43
VSX1-204ENST00000409958 NSUN6Q8TEA1 469 aaKnown RBP24■■□□□ 1.43
VSX1-204ENST00000409958 DPF3Q92784 378 aa24■■□□□ 1.43
VSX1-204ENST00000409958 LENG1Q96BZ8 264 aaPredicted RBP24■■□□□ 1.43
VSX1-204ENST00000409958 TAAR1Q96RJ0 339 aa24■■□□□ 1.43
VSX1-204ENST00000409958 NAP1L2Q9ULW6 460 aaPredicted RBP24■■□□□ 1.43
VSX1-204ENST00000409958 LRRC37A2A6NM11 1700 aa24■■□□□ 1.43
VSX1-204ENST00000409958 ADCY6O43306 1168 aa23.99■■□□□ 1.43
VSX1-204ENST00000409958 ADAMTS4O75173 837 aa23.99■■□□□ 1.43
VSX1-204ENST00000409958 PGK1P00558 417 aa23.99■■□□□ 1.43
VSX1-204ENST00000409958 IQSEC1Q6DN90 963 aa23.99■■□□□ 1.43
VSX1-204ENST00000409958 RMDN3Q96TC7 470 aa23.99■■□□□ 1.43
VSX1-204ENST00000409958 FAM217BQ9NTX9 383 aaPredicted RBP23.99■■□□□ 1.43
VSX1-204ENST00000409958 CNTNAP5Q8WYK1 1306 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 SYNRGQ9UMZ2 1314 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 CCDC196A0A1B0GTZ2 297 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 GCOM1H8Y6P7 765 aaPredicted RBP23.98■■□□□ 1.43
VSX1-204ENST00000409958 MYCNP04198 464 aaPredicted RBP23.98■■□□□ 1.43
VSX1-204ENST00000409958 POLR2MP0CAP2 368 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 ADCYAP1R1P41586 468 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 METAP2P50579 478 aaKnown RBP eCLIP23.98■■□□□ 1.43
VSX1-204ENST00000409958 EVCP57679 992 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 TNFAIP2Q03169 654 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 FUT2Q10981 343 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 IWS1Q96ST2 819 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 PDGFCQ9NRA1 345 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 NID2Q14112 1375 aa23.98■■□□□ 1.43
VSX1-204ENST00000409958 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.97■■□□□ 1.43
VSX1-204ENST00000409958 CDC27P30260 824 aa23.97■■□□□ 1.43
VSX1-204ENST00000409958 UPF3BQ9BZI7 483 aaKnown RBP23.97■■□□□ 1.43
VSX1-204ENST00000409958 SENP6Q9GZR1 1112 aaPredicted RBP23.97■■□□□ 1.43
VSX1-204ENST00000409958 UPF3AQ9H1J1 476 aaKnown RBP23.97■■□□□ 1.43
VSX1-204ENST00000409958 SPC25Q9HBM1 224 aa23.97■■□□□ 1.43
VSX1-204ENST00000409958 RBM47A0AV96 593 aaKnown RBP23.96■■□□□ 1.43
VSX1-204ENST00000409958 GJA9P57773 515 aa23.96■■□□□ 1.43
VSX1-204ENST00000409958 TOB2Q14106 344 aaPredicted RBP23.96■■□□□ 1.43
VSX1-204ENST00000409958 ARHGEF16Q5VV41 709 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms