RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ITPK1Q13572 414 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 PNMA1Q8ND90 353 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 AENQ8WTP8 325 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 P2RX5Q93086 422 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 RBM12Q9NTZ6 932 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 ZNHIT6Q9NWK9 470 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 PCDHA4Q9UN74 947 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 DUOX1Q9NRD9 1551 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 A0A1W2PQC6 194 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 CCNT1O60563 726 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 CAMTA2O94983 1202 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 EEF1GP26641 437 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 RASSF7Q02833 373 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 RRAGAQ7L523 313 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 SNX12Q9UMY4 172 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 PCDHA13Q9Y5I0 950 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 DISP2A7MBM2 1401 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 NUTM2BA6NNL0 878 aaPredicted RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 NUTM2EB1AL46 878 aaPredicted RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 RHOBTB3O94955 611 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 IPO7O95373 1038 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 PDE4CQ08493 712 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 MTMR8Q96EF0 704 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 TRIM9Q9C026 710 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 THAP9Q9H5L6 903 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 NLRC4Q9NPP4 1024 aa23.37■■□□□ 1.33
CTCF-202ENST00000401394 MKRN1Q9UHC7 482 aaKnown RBP23.37■■□□□ 1.33
CTCF-202ENST00000401394 NAP1L1P55209 391 aaKnown RBP23.36■■□□□ 1.33
CTCF-202ENST00000401394 GRIK5Q16478 980 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 VIPAS39Q9H9C1 493 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 MINPP1Q9UNW1 487 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 JRKLQ9Y4A0 524 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 LRRC53A6NM62 1247 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 GUCY2FP51841 1108 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 ZBED6P86452 979 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 ARID5AQ03989 594 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 CABP7Q86V35 215 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 MSL3Q8N5Y2 521 aaKnown RBP23.36■■□□□ 1.33
CTCF-202ENST00000401394 BRIP1Q9BX63 1249 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 GOLPH3Q9H4A6 298 aa23.36■■□□□ 1.33
CTCF-202ENST00000401394 SAP30BPQ9UHR5 308 aaKnown RBP23.36■■□□□ 1.33
CTCF-202ENST00000401394 KDM4FA0A1W2PPD8 638 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 ZEB2O60315 1214 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 KIF11P52732 1056 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 VAV2P52735 878 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 IFT81Q8WYA0 676 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 GPR101Q96P66 508 aaPredicted RBP23.35■■□□□ 1.33
CTCF-202ENST00000401394 OSBPL9Q96SU4 736 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 TMEM260Q9NX78 707 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 BCL9O00512 1426 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 DOCK2Q92608 1830 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 GRIN2DO15399 1336 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 FLT1P17948 1338 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 CALM1P0DP23 149 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 CALM2P0DP24 149 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 CALM3P0DP25 149 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 PPP2R5BQ15173 497 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 MAP9Q49MG5 647 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 ANKRD18AQ8IVF6 992 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 MTA3Q9BTC8 594 aa23.35■■□□□ 1.33
CTCF-202ENST00000401394 DIXDC1Q155Q3 683 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 DEF6Q9H4E7 631 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 ZNF804BA4D1E1 1349 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 GLI1P08151 1106 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 SLC1A4P43007 532 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 CARSP49589 748 aaKnown RBP23.34■■□□□ 1.33
CTCF-202ENST00000401394 SPA17Q15506 151 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 NUDT12Q9BQG2 462 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 SLAIN2Q9P270 581 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 MAD2L2Q9UI95 211 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 ZNF335Q9H4Z2 1342 aaPredicted RBP23.34■■□□□ 1.33
CTCF-202ENST00000401394 M0R2N6 131 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 AKR1B10O60218 316 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 GTF2A1P52655 376 aaPredicted RBP23.34■■□□□ 1.33
CTCF-202ENST00000401394 HAUS3Q68CZ6 603 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 PURBQ96QR8 312 aaKnown RBP23.34■■□□□ 1.33
CTCF-202ENST00000401394 FAM169AQ9Y6X4 670 aa23.34■■□□□ 1.33
CTCF-202ENST00000401394 FTCDO95954 541 aa23.33■■□□□ 1.33
CTCF-202ENST00000401394 TXKP42681 527 aa23.33■■□□□ 1.33
CTCF-202ENST00000401394 ARL6IP4Q66PJ3 421 aaKnown RBP23.33■■□□□ 1.33
CTCF-202ENST00000401394 CAPS2Q9BXY5 557 aa23.33■■□□□ 1.33
CTCF-202ENST00000401394 TBC1D7Q9P0N9 293 aa23.33■■□□□ 1.33
CTCF-202ENST00000401394 FAM184BQ9ULE4 1060 aa23.33■■□□□ 1.33
CTCF-202ENST00000401394 FGRP09769 529 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 CCNE1P24864 410 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 TRAPPC10P48553 1259 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 CKAP4Q07065 602 aaKnown RBP23.33■■□□□ 1.32
CTCF-202ENST00000401394 CAVIN4Q5BKX8 364 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 MMTAG2Q9BU76 263 aaKnown RBP23.33■■□□□ 1.32
CTCF-202ENST00000401394 SH2D4AQ9H788 454 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 BIN2Q9UBW5 565 aaPredicted RBP23.33■■□□□ 1.32
CTCF-202ENST00000401394 NFU1Q9UMS0 254 aa23.33■■□□□ 1.32
CTCF-202ENST00000401394 TARSL2A2RTX5 802 aaKnown RBP23.32■■□□□ 1.32
CTCF-202ENST00000401394 ICE2Q659A1 982 aa23.32■■□□□ 1.32
CTCF-202ENST00000401394 POTEDQ86YR6 584 aa23.32■■□□□ 1.32
CTCF-202ENST00000401394 FAM107BQ9H098 131 aa23.32■■□□□ 1.32
CTCF-202ENST00000401394 GUCY1A3Q02108 690 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 USP17L2Q6R6M4 530 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 TADA2BQ86TJ2 420 aa23.31■■□□□ 1.32
CTCF-202ENST00000401394 ZIM3Q96PE6 472 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms