RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 FOXP1Q9H334 677 aaPredicted RBP10.21□□□□□ -0.77
COL28A1-201ENST00000399429 LGALS16A8MUM7 142 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 ATP5DP30049 168 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 CUL3Q13618 768 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 PPP4R3AQ6IN85 833 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 CCDC105Q8IYK2 499 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 SMC6Q96SB8 1091 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 UBXN6Q9BZV1 441 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 COPRSQ9NQ92 184 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 RNF14Q9UBS8 474 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 ARHGEF10O15013 1369 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 CFAP73A6NFT4 308 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 IGHMBP2P38935 993 aaKnown RBP10.21□□□□□ -0.78
COL28A1-201ENST00000399429 PRCPP42785 496 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 MSH2P43246 934 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 SEPT2Q15019 361 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 LRRC24Q50LG9 513 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 CFAP157Q5JU67 520 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 FANCBQ8NB91 859 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 TBC1D5Q92609 795 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 FMO2Q99518 471 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 DDX47Q9H0S4 455 aaKnown RBP10.21□□□□□ -0.78
COL28A1-201ENST00000399429 TBC1D7Q9P0N9 293 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 INTUQ9ULD6 942 aa10.21□□□□□ -0.78
COL28A1-201ENST00000399429 SPDYE3A6NKU9 549 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 CCT8L1PA6NM43 557 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 FLOT1O75955 427 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ATP6V1G2O95670 118 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SKIP12755 728 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ABCB4P21439 1286 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ARMC3Q5W041 872 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 USPL1Q5W0Q7 1092 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ILDR1Q86SU0 546 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF654Q8IZM8 581 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 TSEN2Q8NCE0 465 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 TAF1DQ9H5J8 278 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 MKNK2Q9HBH9 465 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SAMD9LQ8IVG5 1584 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 PAPOLAP51003 745 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 GFPT1Q06210 699 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 RCSD1Q6JBY9 416 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SAMD1Q6SPF0 538 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 PI16Q6UXB8 463 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 DDX42Q86XP3 938 aaKnown RBP eCLIP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SCYL3Q8IZE3 742 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 TEKT4Q8WW24 435 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 FGD4Q96M96 766 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 NAP1L3Q99457 506 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 LSM14BQ9BX40 385 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 PUS7LQ9H0K6 701 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ADAMTS1Q9UHI8 967 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 STX8Q9UNK0 236 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SH3TC1Q8TE82 1336 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 RNMTO43148 476 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 CALML3P27482 149 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 PDE6CP51160 858 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 COG7P83436 770 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 DDR1Q08345 913 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 LLGL1Q15334 1064 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 TMED8Q6PL24 325 aaPredicted RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 FAM47EQ6ZV65 393 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SV2BQ7L1I2 683 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 TMC4Q7Z404 712 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 CROCCP2Q86T23 111 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 SEC63Q9UGP8 760 aaKnown RBP10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ASIC3Q9UHC3 531 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF532Q9HCE3 1301 aa10.2□□□□□ -0.78
COL28A1-201ENST00000399429 ZSCAN5CA6NGD5 496 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 PGRMC1O00264 195 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 CYP7A1P22680 504 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TMED1Q13445 227 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TTMPQ5BVD1 217 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 ANKRD20A8PQ5CZ79 823 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 SH2D4BQ5SQS7 431 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TMEM154Q6P9G4 183 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TMEM139Q8IV31 216 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 NELFCDQ8IXH7 590 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 OXER1Q8TDS5 423 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 DLGAP2Q9P1A6 1054 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 UHRF1BP1LA0JNW5 1464 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 PTPN12Q05209 780 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 SNX1Q13596 522 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 EPHA10Q5JZY3 1008 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 MSL3Q8N5Y2 521 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 ZNF513Q8N8E2 541 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 CEP63Q96MT8 703 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 ADGRL3Q9HAR2 1447 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 USP42Q9H9J4 1324 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 G3V3G9 751 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 PRPF6O94906 941 aaKnown RBP10.19□□□□□ -0.78
COL28A1-201ENST00000399429 CUL1Q13616 776 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 DCAF8Q5TAQ9 597 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 MMGT1Q8N4V1 131 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 NEK9Q8TD19 979 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 TBK1Q9UHD2 729 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 AMFRQ9UKV5 643 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 PNMA2Q9UL42 364 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 MTUS1Q9ULD2 1270 aa10.19□□□□□ -0.78
COL28A1-201ENST00000399429 IGF2BP3O00425 579 aaKnown RBP eCLIP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms