RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 SLC43A3Q8NBI5 491 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 MAFAQ8NHW3 353 aaPredicted RBP10.38□□□□□ -0.75
ATG4A-205ENST00000394892 SYMPKQ92797 1274 aaKnown RBP10.38□□□□□ -0.75
ATG4A-205ENST00000394892 MAP4K1Q92918 833 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 MTMR8Q96EF0 704 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 CDX2Q99626 313 aaPredicted RBP10.38□□□□□ -0.75
ATG4A-205ENST00000394892 LSG1Q9H089 658 aaKnown RBP10.38□□□□□ -0.75
ATG4A-205ENST00000394892 SEMA6BQ9H3T3 888 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 CTNNA3Q9UI47 895 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 MAD2L2Q9UI95 211 aa10.38□□□□□ -0.75
ATG4A-205ENST00000394892 ZNFX1Q9P2E3 1918 aaKnown RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 PALM3A6NDB9 673 aaPredicted RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 MOXD2PA6NHM9 499 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 E7EWF7 191 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 KIAA0355O15063 1070 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 PQBP1O60828 265 aaKnown RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 CALML3P27482 149 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 CDC37Q16543 378 aaPredicted RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 QRICH1Q2TAL8 776 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 USH1GQ495M9 461 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 GNASQ5JWF2 1037 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 GPATCH4Q5T3I0 446 aaKnown RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 CXCL17Q6UXB2 119 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 CHST3Q7LGC8 479 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 IQCA1Q86XH1 822 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 MB21D2Q8IYB1 491 aaPredicted RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 KRT23Q9C075 422 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 KAT14Q9H8E8 782 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 TBX21Q9UL17 535 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 LAMA2P24043 3122 aaKnown RBP10.37□□□□□ -0.75
ATG4A-205ENST00000394892 LCTP09848 1927 aa10.37□□□□□ -0.75
ATG4A-205ENST00000394892 PTPDC1A2A3K4 754 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 DYNC1LI2O43237 492 aaPredicted RBP10.36□□□□□ -0.75
ATG4A-205ENST00000394892 CYTH3O43739 400 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 ARIH2O95376 493 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 CLTBP09497 229 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 FOSL2P15408 326 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 NT5C2P49902 561 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 TROAPQ12815 778 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 CCDC178Q5BJE1 867 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 IQSEC1Q6DN90 963 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 RNF207Q6ZRF8 634 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 C16orf59Q7L2K0 433 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 TLK2Q86UE8 772 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 RGS22Q8NE09 1264 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 SYTL5Q8TDW5 730 aaPredicted RBP10.36□□□□□ -0.75
ATG4A-205ENST00000394892 IGDCC4Q8TDY8 1250 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 COPS5Q92905 334 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 VWCEQ96DN2 955 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 TOX2Q96NM4 488 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 TAAR1Q96RJ0 339 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 VAT1LQ9HCJ6 419 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 STARD7Q9NQZ5 370 aa10.36□□□□□ -0.75
ATG4A-205ENST00000394892 RBM8AQ9Y5S9 174 aaKnown RBP10.36□□□□□ -0.75
ATG4A-205ENST00000394892 ELP1O95163 1332 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 CUL9Q8IWT3 2517 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 TMEM265A0A087WTH1 108 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 ARVCFO00192 962 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 CD4P01730 458 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 PARP1P09874 1014 aaKnown RBP10.35□□□□□ -0.75
ATG4A-205ENST00000394892 RAG1P15918 1043 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 PSMC6P62333 389 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 FSCN1Q16658 493 aaKnown RBP10.35□□□□□ -0.75
ATG4A-205ENST00000394892 DUSP28Q4G0W2 176 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 ASPRV1Q53RT3 343 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 IFIT1BQ5T764 474 aaKnown RBP10.35□□□□□ -0.75
ATG4A-205ENST00000394892 KIAA1211Q6ZU35 1233 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 FAM126BQ8IXS8 530 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 PPP1R13LQ8WUF5 828 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 RNPC3Q96LT9 517 aaKnown RBP10.35□□□□□ -0.75
ATG4A-205ENST00000394892 ESYT1Q9BSJ8 1104 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 CNNM2Q9H8M5 875 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 VTA1Q9NP79 307 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 U3KPZ7 1027 aaPredicted RBP10.35□□□□□ -0.75
ATG4A-205ENST00000394892 PLXNA1Q9UIW2 1896 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 LRRC37A2A6NM11 1700 aa10.35□□□□□ -0.75
ATG4A-205ENST00000394892 UMODL1Q5DID0 1318 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 KLRF2D3W0D1 207 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 GHRHRQ02643 423 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 GRM4Q14833 912 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 NECTIN1Q15223 517 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 CCDC62Q6P9F0 684 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 NOL8Q76FK4 1167 aaKnown RBP10.34□□□□□ -0.75
ATG4A-205ENST00000394892 PCSK9Q8NBP7 692 aaKnown RBP10.34□□□□□ -0.75
ATG4A-205ENST00000394892 NUP133Q8WUM0 1156 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 RUFY2Q8WXA3 655 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 MYLIPQ8WY64 445 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 UBAC1Q9BSL1 405 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 WDR11Q9BZH6 1224 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 RIOX1Q9H6W3 641 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 TMEM39AQ9NV64 488 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 Q9Y3F1 56 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 LAMA4Q16363 1823 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 COL6A3P12111 3177 aa10.34□□□□□ -0.75
ATG4A-205ENST00000394892 LTBP2Q14767 1821 aa10.33□□□□□ -0.76
ATG4A-205ENST00000394892 LOC102724159A0A0B4J2E5 919 aa10.33□□□□□ -0.76
ATG4A-205ENST00000394892 A0A0U1RQG5 324 aaPredicted RBP10.33□□□□□ -0.76
ATG4A-205ENST00000394892 DCDC2CA8MYV0 355 aa10.33□□□□□ -0.76
ATG4A-205ENST00000394892 IFIT3O14879 490 aaKnown RBP10.33□□□□□ -0.76
ATG4A-205ENST00000394892 SLC27A2O14975 620 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms