RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 STK17AQ9UEE5 414 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 ANAPC4Q9UJX5 808 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 EXOC7Q9UPT5 735 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 RABGAP1Q9Y3P9 1069 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 HHIPL2Q6UWX4 724 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 FAM178BQ8IXR5 827 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 AZI2Q9H6S1 392 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 DISC1Q9NRI5 854 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 MCM6Q14566 821 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 OR8K1Q8NGG5 319 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 CAPZA3Q96KX2 299 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 LARSQ9P2J5 1176 aaKnown RBP16.09■□□□□ 0.17
TCOF1-202ENST00000377797 U2AF2P26368 475 aaKnown RBP eCLIP16.09■□□□□ 0.17
TCOF1-202ENST00000377797 RCSD1Q6JBY9 416 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 DEFB132Q7Z7B7 95 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 CEP112Q8N8E3 955 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 ENOX1Q8TC92 643 aaKnown RBP16.09■□□□□ 0.17
TCOF1-202ENST00000377797 ZNF577Q9BSK1 485 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 ZBTB12Q9Y330 459 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-202ENST00000377797 PTPN21Q16825 1174 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 FAM83BQ5T0W9 1011 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 SHC4Q6S5L8 630 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 ADGRA1Q86SQ6 560 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 RGL2O15211 777 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 CASP1P29466 404 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 SLC9C1Q4G0N8 1177 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 VWA3BQ502W6 1294 aa16.09■□□□□ 0.17
TCOF1-202ENST00000377797 SAMSN1Q9NSI8 373 aaKnown RBP16.09■□□□□ 0.17
TCOF1-202ENST00000377797 CBX1P83916 185 aa16.08■□□□□ 0.17
TCOF1-202ENST00000377797 XKR9Q5GH70 373 aa16.08■□□□□ 0.17
TCOF1-202ENST00000377797 ZNF658Q5TYW1 1059 aaPredicted RBP16.08■□□□□ 0.17
TCOF1-202ENST00000377797 FAM205CA6NFA0 338 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 SORBS3O60504 671 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 ATP1A3P13637 1013 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 QRICH1Q2TAL8 776 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 TMEM260Q9NX78 707 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 ARMCX3Q9UH62 379 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-202ENST00000377797 ZNRF3Q9ULT6 936 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 LTN1O94822 1766 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 SRGNP10124 158 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 CACNB1Q02641 598 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-202ENST00000377797 STRN3Q13033 797 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 C16orf86Q6ZW13 317 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 RRAGAQ7L523 313 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 OTUD6AQ7L8S5 288 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 ADGRF4Q8IZF3 695 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 CHD2O14647 1828 aaKnown RBP16.08■□□□□ 0.16
TCOF1-202ENST00000377797 TCRBV5S4A2TA0A5A2 114 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 MEIS1O00470 390 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 ZNF500O60304 480 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-202ENST00000377797 COPB1P53618 953 aaKnown RBP16.08■□□□□ 0.16
TCOF1-202ENST00000377797 STYK1Q6J9G0 422 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 NCAPG2Q86XI2 1143 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 GLG1Q92896 1179 aa16.08■□□□□ 0.16
TCOF1-202ENST00000377797 WTIPA6NIX2 430 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 MYL1P05976 194 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 LRRC41Q15345 812 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 HERC5Q9UII4 1024 aaKnown RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 PYCARDQ9ULZ3 195 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 GNA14O95837 355 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 TROAPQ12815 778 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 CACTINQ8WUQ7 758 aaKnown RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 LMBR1Q8WVP7 490 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 SPZ1Q9BXG8 430 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 RIOK3O14730 519 aaKnown RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 XRCC5P13010 732 aaKnown RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 MAGEA1P43355 309 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 CYP2J2P51589 502 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 NCBP1Q09161 790 aaKnown RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 CCDC51Q96ER9 411 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 DHTKD1Q96HY7 919 aaPredicted RBP16.07■□□□□ 0.16
TCOF1-202ENST00000377797 DESI2Q9BSY9 194 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 WDR11Q9BZH6 1224 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 TTBK2Q6IQ55 1244 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 LEKR1Q6ZMV7 388 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 GOLGA1Q92805 767 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 TUBGCP2Q9BSJ2 902 aa16.07■□□□□ 0.16
TCOF1-202ENST00000377797 ADAM9Q13443 819 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 FMNL3Q8IVF7 1028 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 P2RX5Q93086 422 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 SELENOOQ9BVL4 669 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 ARFGAP3Q9NP61 516 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 GINS2Q9Y248 185 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 ASIC2Q16515 512 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 GJA10Q969M2 543 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 DLG5Q8TDM6 1919 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 JAKMIP2Q96AA8 810 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 CNOT6LQ96LI5 555 aaKnown RBP16.06■□□□□ 0.16
TCOF1-202ENST00000377797 PHF20Q9BVI0 1012 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 POTEMA6NI47 508 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 AP3B2Q13367 1082 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 ODR4Q5SWX8 454 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 FAM102BQ5T8I3 360 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 VTI1AQ96AJ9 217 aa16.06■□□□□ 0.16
TCOF1-202ENST00000377797 PSDA5PKW4 1024 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-202ENST00000377797 KLHL30Q0D2K2 578 aa16.05■□□□□ 0.16
TCOF1-202ENST00000377797 SYNCQ9H7C4 482 aa16.05■□□□□ 0.16
TCOF1-202ENST00000377797 MLXIPQ9HAP2 919 aa16.05■□□□□ 0.16
TCOF1-202ENST00000377797 PCDHA6Q9UN73 950 aa16.05■□□□□ 0.16
TCOF1-202ENST00000377797 PCDHA8Q9Y5H6 950 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms