RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 ANKRD40Q6AI12 368 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 SH3BP5LQ7L8J4 393 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 CHP1Q99653 195 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 NUDT12Q9BQG2 462 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 A0A1W2PQJ5 194 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 RCCD1A6NED2 376 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 ZNF263O14978 683 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 FCER1AP12319 257 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 KLK7P49862 253 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 ZNF543Q08ER8 600 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 PPP4R3AQ6IN85 833 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 CLEC10AQ8IUN9 316 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 TBCKQ8TEA7 893 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 TBC1D22AQ8WUA7 517 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 RIC8AQ9NPQ8 531 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 ATRNL1Q5VV63 1379 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 ABCB11O95342 1321 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 MAP2K7O14733 419 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 PPEF1O14829 653 aaPredicted RBP10.79□□□□□ -0.68
TRIM39-202ENST00000376659 LDHCP07864 332 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 CCDC175P0C221 793 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 CDK17Q00537 523 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 SPIRE1Q08AE8 756 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 SHROOM1Q2M3G4 852 aaPredicted RBP10.79□□□□□ -0.68
TRIM39-202ENST00000376659 TMC4Q7Z404 712 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 NEK8Q86SG6 692 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 TEX2Q8IWB9 1127 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 DNAJC19Q96DA6 116 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 DHTKD1Q96HY7 919 aaPredicted RBP10.79□□□□□ -0.68
TRIM39-202ENST00000376659 ERGIC2Q96RQ1 377 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 MKNK2Q9HBH9 465 aa10.79□□□□□ -0.68
TRIM39-202ENST00000376659 SMCO2A6NFE2 343 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 PLCG2P16885 1265 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 PPP2R3AQ06190 1150 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 NONOQ15233 471 aaKnown RBP eCLIP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ARHGAP29Q52LW3 1261 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ASPRV1Q53RT3 343 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 CC2D1AQ6P1N0 951 aaPredicted RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 GTPBP4Q9BZE4 634 aaKnown RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ZC3H4Q9UPT8 1303 aaKnown RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 FRMD3A2A2Y4 597 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 MYMKA6NI61 221 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 PSMD14O00487 310 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 GABPB1Q06547 395 aaPredicted RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 CABP7Q86V35 215 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 MXD3Q9BW11 206 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 COA1Q9GZY4 146 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 TDP2O95551 362 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 SLURP2P0DP57 97 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ST5P78524 1137 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 SPAG1Q07617 926 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 TRAPPC11Q7Z392 1133 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ZNF572Q7Z3I7 529 aaPredicted RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 ZFPM1Q8IX07 1006 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 MSL3Q8N5Y2 521 aaKnown RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 RPGRQ92834 1020 aaKnown RBP10.78□□□□□ -0.68
TRIM39-202ENST00000376659 TRIM10Q9UDY6 481 aa10.78□□□□□ -0.68
TRIM39-202ENST00000376659 CYP3A7-CYP3A51PA0A087WV96 503 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CCDC194A0A1B0GVG4 234 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 TULP1O00294 542 aaPredicted RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 EPHB6O15197 1021 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CCNT1O60563 726 aaKnown RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CYP3A7P24462 503 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CCNE1P24864 410 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 FKBP1AP62942 108 aaKnown RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 ASTE1Q2TB18 679 aaPredicted RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CDC42EP5Q6NZY7 148 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 TMTC1Q8IUR5 882 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 ADGRF4Q8IZF3 695 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 GLIS3Q8NEA6 775 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 P2RX5Q93086 422 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 MKL1Q969V6 931 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 PNKPQ96T60 521 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 FUT8Q9BYC5 575 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 VPS16Q9H269 839 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 KCNMB3Q9NPA1 279 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 WDR90Q96KV7 1748 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 OPLAHO14841 1288 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 CASQ1P31415 396 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 PDIA5Q14554 519 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 TATDN1Q6P1N9 297 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 HHIPL2Q6UWX4 724 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 ZNF444Q8N0Y2 327 aaPredicted RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 GPR161Q8N6U8 529 aaKnown RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 HNRNPLLQ8WVV9 542 aaKnown RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 RABGGTAQ92696 567 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 FGFBP2Q9BYJ0 223 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 MYO1AQ9UBC5 1043 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 TTF2Q9UNY4 1162 aaKnown RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 PCDHAC2Q9Y5I4 1007 aa10.77□□□□□ -0.69
TRIM39-202ENST00000376659 FRMPD2Q68DX3 1309 aaPredicted RBP10.77□□□□□ -0.69
TRIM39-202ENST00000376659 MMP14P50281 582 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 GNG11P61952 73 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 CYP26C1Q6V0L0 522 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 OLIG1Q8TAK6 271 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 HPS3Q969F9 1004 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 LENG9Q96B70 501 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 RRP36Q96EU6 259 aaKnown RBP10.76□□□□□ -0.69
TRIM39-202ENST00000376659 MAPK8IP1Q9UQF2 711 aa10.76□□□□□ -0.69
TRIM39-202ENST00000376659 UBAP1LF5GYI3 381 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms