RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 TBCKQ8TEA7 893 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 LRRC45Q96CN5 670 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PLVAPQ9BX97 442 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PXDNQ92626 1479 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CPDO75976 1380 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 HEXIM1O94992 359 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ADAM9Q13443 819 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 MFSD14BQ5SR56 506 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CAPN12Q6ZSI9 719 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 AMFRQ9UKV5 643 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ECM2O94769 699 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ADCY1Q08828 1119 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 IFT88Q13099 833 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NNTQ13423 1086 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 SH3RF3Q8TEJ3 882 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 TACO1Q9BSH4 297 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 USP40Q9NVE5 1235 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 RIPOR2Q9Y4F9 1068 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 KDM3AQ9Y4C1 1321 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ARHGAP25P42331 645 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ST3GAL1Q11201 340 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 BIRC3Q13489 604 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 MTMR3Q13615 1198 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NFRKBQ6P4R8 1299 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 TAB3Q8N5C8 712 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 RPGRIP1Q96KN7 1286 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NAP1L3Q99457 506 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NAP1L4Q99733 375 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 IQCGQ9H095 443 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 KIF11P52732 1056 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ZBTB16Q05516 673 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 USP17L2Q6R6M4 530 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 KIFC2Q96AC6 838 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NKIRAS1Q9NYS0 192 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 NFU1Q9UMS0 254 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ARHGEF35A5YM69 484 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CTIFO43310 598 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 EXOC3O60645 756 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CFBP00751 764 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 XRCC5P13010 732 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 KLK7P49862 253 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ANTXR2P58335 489 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ARFGAP2Q8N6H7 521 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 LARP4BQ92615 738 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CCDC77Q9BR77 488 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PLCB1Q9NQ66 1216 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PTPRUQ92729 1446 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 IFNAR1P17181 557 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 PHLDB2Q86SQ0 1253 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 DISC1Q9NRI5 854 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 TFR2Q9UP52 801 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 AGTPBP1Q9UPW5 1226 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 TBC1D8O95759 1140 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 FDPSP14324 419 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 EEF1GP26641 437 aaKnown RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CYP4A11Q02928 519 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 LLGL1Q15334 1064 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 DOK7Q18PE1 504 aa7.2□□□□□ -1.26
SMC1A-202ENST00000375340 ENAHQ8N8S7 591 aaPredicted RBP7.2□□□□□ -1.26
SMC1A-202ENST00000375340 CLIC2O15247 247 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 SETDB1Q15047 1291 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 FBF1Q8TES7 1133 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ATG3Q9NT62 314 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 FBXO2Q9UK22 296 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 MON2Q7Z3U7 1717 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ZNF804BA4D1E1 1349 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 FAM208AQ9UK61 1670 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ATP8B1O43520 1251 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ZNF131P52739 623 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 GTF2IP78347 998 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 LACTBP83111 547 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 USPL1Q5W0Q7 1092 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 CABS1Q96KC9 395 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 TMEM260Q9NX78 707 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 NBPF26B4DH59 902 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 RGS16O15492 202 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ACTN4O43707 911 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 GNA14O95837 355 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 FAM102BQ5T8I3 360 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 NBPF10Q6P3W6 841 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 NBPF15Q8N660 670 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 DHTKD1Q96HY7 919 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 LTN1O94822 1766 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 DIXDC1Q155Q3 683 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 CCDC84Q86UT8 332 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 PROCA1Q8NCQ7 364 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 KIFAP3Q92845 792 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 K7ENM7 598 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 VPS41P49754 854 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 RPS8P62241 208 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 ZC3H12CQ9C0D7 883 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 TTLL12Q14166 644 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 TRIM68Q6AZZ1 485 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 RUFY4Q6ZNE9 571 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 PACSIN2Q9UNF0 486 aaPredicted RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 N4BP1O75113 896 aaKnown RBP7.19□□□□□ -1.26
SMC1A-202ENST00000375340 PALMO75781 387 aa7.19□□□□□ -1.26
SMC1A-202ENST00000375340 EPHB4P54760 987 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms