RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DCDC2CA8MYV0 355 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 E7EWF7 191 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 KIAA0355O15063 1070 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 BEX3Q00994 111 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 QRICH1Q2TAL8 776 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 GPR153Q6NV75 609 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 KIAA1211Q6ZU35 1233 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 STAG2Q8N3U4 1231 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 DNERQ8NFT8 737 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 NCOA7Q8NI08 942 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 AP5M1Q9H0R1 490 aa25.33■■□□□ 1.65
CCDC28B-201ENST00000373602 DYNC1LI2O43237 492 aaPredicted RBP25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 PTGS1P23219 599 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 ITGB8P26012 769 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 CDK7P50613 346 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 FAAP100Q0VG06 881 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 FSCN1Q16658 493 aaKnown RBP25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 TMEM63BQ5T3F8 832 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 STOX1Q6ZVD7 989 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 RALYLQ86SE5 291 aaKnown RBP25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 VTI1AQ96AJ9 217 aa25.32■■□□□ 1.64
CCDC28B-201ENST00000373602 A0A0U1RQG5 324 aaPredicted RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 RBM47A0AV96 593 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 IFIT3O14879 490 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 DHX16O60231 1041 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 EDNRBP24530 442 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 DUSP28Q4G0W2 176 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 MPHOSPH6Q99547 160 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 VAT1LQ9HCJ6 419 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 TMEM39AQ9NV64 488 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 MAD2L2Q9UI95 211 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 RBM8AQ9Y5S9 174 aaKnown RBP25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 MROH7Q68CQ1 1323 aa25.31■■□□□ 1.64
CCDC28B-201ENST00000373602 PALM3A6NDB9 673 aaPredicted RBP25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 ARVCFO00192 962 aa25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 PDE4DQ08499 809 aa25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 CENPQQ7L2Z9 268 aaPredicted RBP25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 FBXO11Q86XK2 927 aa25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 SZT2Q5T011 3432 aa25.3■■□□□ 1.64
CCDC28B-201ENST00000373602 ERICH2A1L162 156 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 KLRF2D3W0D1 207 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 ZEB2O60315 1214 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 CABYRO75952 493 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 RAG1P15918 1043 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 CXCL17Q6UXB2 119 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 MCF2L2Q86YR7 1114 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 TBC1D5Q92609 795 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 MTMR8Q96EF0 704 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 WDR11Q9BZH6 1224 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 SENP2Q9HC62 589 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 MRPL11Q9Y3B7 192 aaKnown RBP25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 LAMA3Q16787 3333 aa25.29■■□□□ 1.64
CCDC28B-201ENST00000373602 B4DLN1 442 aa25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 MRPL12P52815 198 aaKnown RBP25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 GRM4Q14833 912 aa25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 SART3Q15020 963 aaKnown RBP25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 MB21D2Q8IYB1 491 aaPredicted RBP25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 LSG1Q9H089 658 aaKnown RBP25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 TBX21Q9UL17 535 aa25.28■■□□□ 1.64
CCDC28B-201ENST00000373602 ANTXR2P58335 489 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 WTAPQ15007 396 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 SHHQ15465 462 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 CHST3Q7LGC8 479 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 SLC43A3Q8NBI5 491 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 SYTL5Q8TDW5 730 aaPredicted RBP25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 ESYT1Q9BSJ8 1104 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 AMNQ9BXJ7 453 aa25.27■■□□□ 1.64
CCDC28B-201ENST00000373602 TROAPQ12815 778 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 C9orf50Q5SZB4 431 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 FAM126BQ8IXS8 530 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 IGDCC4Q8TDY8 1250 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 TAAR1Q96RJ0 339 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 COL20A1Q9P218 1284 aa25.26■■□□□ 1.63
CCDC28B-201ENST00000373602 MYH6P13533 1939 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 ZBTB5O15062 677 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 NKRFO15226 690 aaKnown RBP eCLIP25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 BMP2KLQ5H9B9 411 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 TMEM67Q5HYA8 995 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 SCFD2Q8WU76 684 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 SEZ6LQ9BYH1 1024 aa25.25■■□□□ 1.63
CCDC28B-201ENST00000373602 PPP1R11O60927 126 aaPredicted RBP25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 TIMP1P01033 207 aa25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 SLC35G1Q2M3R5 365 aa25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 SKAP1Q86WV1 359 aa25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 NSUN6Q8TEA1 469 aaKnown RBP25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 RIOX1Q9H6W3 641 aa25.24■■□□□ 1.63
CCDC28B-201ENST00000373602 GRIN2DO15399 1336 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 TLR3O15455 904 aaKnown RBP25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 CD4P01730 458 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 GHRHRQ02643 423 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 FPGSQ05932 587 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 ITGA7Q13683 1181 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 PPP2R5BQ15173 497 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 MTA3Q9BTC8 594 aa25.23■■□□□ 1.63
CCDC28B-201ENST00000373602 OPLAHO14841 1288 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 CPT1AP50416 773 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 EPHB4P54760 987 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 CATIPQ7Z7H3 387 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 DEFB123Q8N688 67 aa25.22■■□□□ 1.63
CCDC28B-201ENST00000373602 OR6J1Q8NGC5 347 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms