RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 NPY5RQ15761 445 aa16■□□□□ 0.15
LDB3-204ENST00000372066 METTL16Q86W50 562 aaKnown RBP16■□□□□ 0.15
LDB3-204ENST00000372066 NEDD1Q8NHV4 660 aa16■□□□□ 0.15
LDB3-204ENST00000372066 DPF3Q92784 378 aa16■□□□□ 0.15
LDB3-204ENST00000372066 SHISA4Q96DD7 197 aa16■□□□□ 0.15
LDB3-204ENST00000372066 RNF208Q9H0X6 261 aa16■□□□□ 0.15
LDB3-204ENST00000372066 KCNF1Q9H3M0 494 aa16■□□□□ 0.15
LDB3-204ENST00000372066 IMPACTQ9P2X3 320 aa16■□□□□ 0.15
LDB3-204ENST00000372066 TAOK2Q9UL54 1235 aa16■□□□□ 0.15
LDB3-204ENST00000372066 BRCA2P51587 3418 aa16■□□□□ 0.15
LDB3-204ENST00000372066 PTGS1P23219 599 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 SMARCA1P28370 1054 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 GSDMDP57764 484 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 RHBDL3P58872 404 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 EVX2Q03828 476 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 CT47A1Q5JQC4 288 aaPredicted RBP15.99■□□□□ 0.15
LDB3-204ENST00000372066 TTC38Q5R3I4 469 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 NT5DC1Q5TFE4 455 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 CCDC186Q7Z3E2 898 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 MAPKAPK5Q8IW41 473 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 DAGLBQ8NCG7 672 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 DYNLL2Q96FJ2 89 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 ZNF830Q96NB3 372 aaPredicted RBP15.99■□□□□ 0.15
LDB3-204ENST00000372066 GABRQQ9UN88 632 aa15.99■□□□□ 0.15
LDB3-204ENST00000372066 GJB1P08034 283 aa15.98■□□□□ 0.15
LDB3-204ENST00000372066 POSTNQ15063 836 aa15.98■□□□□ 0.15
LDB3-204ENST00000372066 LONRF3Q496Y0 759 aa15.98■□□□□ 0.15
LDB3-204ENST00000372066 CCDC84Q86UT8 332 aaPredicted RBP15.98■□□□□ 0.15
LDB3-204ENST00000372066 SMCR8Q8TEV9 937 aaPredicted RBP15.98■□□□□ 0.15
LDB3-204ENST00000372066 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.98■□□□□ 0.15
LDB3-204ENST00000372066 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.98■□□□□ 0.15
LDB3-204ENST00000372066 SLC45A1Q9Y2W3 748 aa15.98■□□□□ 0.15
LDB3-204ENST00000372066 RBBP6Q7Z6E9 1792 aaKnown RBP15.97■□□□□ 0.15
LDB3-204ENST00000372066 GREB1LQ9C091 1923 aaPredicted RBP15.97■□□□□ 0.15
LDB3-204ENST00000372066 TBC1D12O60347 775 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 GJA8P48165 433 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 NOVP48745 357 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 CDK8P49336 464 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 FXR1P51114 621 aaKnown RBP eCLIP15.97■□□□□ 0.15
LDB3-204ENST00000372066 ATP2C1P98194 919 aaPredicted RBP15.97■□□□□ 0.15
LDB3-204ENST00000372066 MDM2Q00987 491 aaPredicted RBP15.97■□□□□ 0.15
LDB3-204ENST00000372066 MYL5Q02045 173 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 SLAIN1Q8ND83 568 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 ERCC4Q92889 916 aaPredicted RBP15.97■□□□□ 0.15
LDB3-204ENST00000372066 SPZ1Q9BXG8 430 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 MAD2L2Q9UI95 211 aa15.97■□□□□ 0.15
LDB3-204ENST00000372066 PALM3A6NDB9 673 aaPredicted RBP15.96■□□□□ 0.15
LDB3-204ENST00000372066 BIN1O00499 593 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 CBFA2T2O43439 604 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 ADCY3O60266 1144 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 FLT3LGP49771 235 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 PLCD1P51178 756 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 PNOCQ13519 176 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 ARL6IP4Q66PJ3 421 aaKnown RBP15.96■□□□□ 0.15
LDB3-204ENST00000372066 BLIDQ8IZY5 108 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 MLKLQ8NB16 471 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 CCDC12Q8WUD4 166 aaPredicted RBP15.96■□□□□ 0.15
LDB3-204ENST00000372066 CSRNP2Q9H175 543 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 ZSWIM8A7E2V4 1837 aa15.96■□□□□ 0.15
LDB3-204ENST00000372066 BAZ2BQ9UIF8 2168 aaKnown RBP15.96■□□□□ 0.15
LDB3-204ENST00000372066 FAM196BA6NMK8 535 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 hCG_1984214I3L0E3 225 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 TNPO2O14787 897 aaKnown RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 POLR2DO15514 142 aaKnown RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 NPM3O75607 178 aaKnown RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 SMC2O95347 1197 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 TOP1P11387 765 aaKnown RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 NCAPHQ15003 741 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 ZNF713Q8N859 430 aaPredicted RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 SMARCE1Q969G3 411 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 PRIMPOLQ96LW4 560 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 TMEM47Q9BQJ4 181 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 SAP30BPQ9UHR5 308 aaKnown RBP15.96■□□□□ 0.14
LDB3-204ENST00000372066 PCDHA4Q9UN74 947 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 AGTPBP1Q9UPW5 1226 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 PCDHA5Q9Y5H7 936 aa15.96■□□□□ 0.14
LDB3-204ENST00000372066 hCG_1642624A0A1W2PR95 340 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 ACTN4O43707 911 aaKnown RBP15.95■□□□□ 0.14
LDB3-204ENST00000372066 SARSP49591 514 aaKnown RBP15.95■□□□□ 0.14
LDB3-204ENST00000372066 SPP2Q13103 211 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 PPP4R3BQ5MIZ7 849 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 ANKRD13CQ8N6S4 541 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 OSBPL5Q9H0X9 879 aaPredicted RBP15.95■□□□□ 0.14
LDB3-204ENST00000372066 UNC93B1Q9H1C4 597 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 SWAP70Q9UH65 585 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 SERTAD1Q9UHV2 236 aa15.95■□□□□ 0.14
LDB3-204ENST00000372066 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.94■□□□□ 0.14
LDB3-204ENST00000372066 SLFN14P0C7P3 912 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 ELNP15502 786 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 ATP2B1P20020 1258 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 EARS2Q5JPH6 523 aaKnown RBP15.94■□□□□ 0.14
LDB3-204ENST00000372066 DNTTIP2Q5QJE6 756 aaKnown RBP15.94■□□□□ 0.14
LDB3-204ENST00000372066 TREML2Q5T2D2 321 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 CCDC150Q8NCX0 1101 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 SPATA20Q8TB22 786 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 U2AF1L4Q8WU68 220 aaKnown RBP15.94■□□□□ 0.14
LDB3-204ENST00000372066 HTATIP2Q9BUP3 242 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 BARHL2Q9NY43 387 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 PYCARDQ9ULZ3 195 aa15.94■□□□□ 0.14
LDB3-204ENST00000372066 STX8Q9UNK0 236 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms