RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CCT2P78371 535 aaKnown RBP17.46■□□□□ 0.38
SMPDL3A-201ENST00000368440 IFFO2Q5TF58 517 aa17.46■□□□□ 0.38
SMPDL3A-201ENST00000368440 EN2P19622 333 aaPredicted RBP17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 AK2P54819 239 aa17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 MAMDC4Q6UXC1 1216 aa17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 ZNF467Q7Z7K2 595 aaPredicted RBP17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 SHISA4Q96DD7 197 aa17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 DEFB118Q96PH6 123 aa17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 COL20A1Q9P218 1284 aa17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 SEC63Q9UGP8 760 aaKnown RBP17.45■□□□□ 0.38
SMPDL3A-201ENST00000368440 PPFIA3O75145 1194 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 SNAI1O95863 264 aaPredicted RBP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 GJB1P08034 283 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 RGS22Q8NE09 1264 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 ALDH8A1Q9H2A2 487 aaPredicted RBP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 SYNGAP1Q96PV0 1343 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 RBM25P49756 843 aaKnown RBP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 NEK4P51957 841 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 STK3Q13188 491 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 NOL8Q76FK4 1167 aaKnown RBP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 ARMCX2Q7L311 632 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 U2AF1L4Q8WU68 220 aaKnown RBP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 GPKOWQ92917 476 aaPredicted RBP eCLIP17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 TPCN1Q9ULQ1 816 aa17.44■□□□□ 0.38
SMPDL3A-201ENST00000368440 KIAA0100Q14667 2235 aaKnown RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 CFBP00751 764 aa17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 CNGA1P29973 690 aa17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 ALDH5A1P51649 535 aaPredicted RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 NTRK3Q16288 839 aa17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 MSL3Q8N5Y2 521 aaKnown RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 SYTL5Q8TDW5 730 aaPredicted RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 ZNF274Q96GC6 653 aaPredicted RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.43■□□□□ 0.38
SMPDL3A-201ENST00000368440 ZNF865P0CJ78 1059 aaPredicted RBP17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 GJA8P48165 433 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 HSD17B4P51659 736 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 PPP2R5BQ15173 497 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 MCF2L2Q86YR7 1114 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 PHKBQ93100 1093 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 TAAR1Q96RJ0 339 aa17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 V9GY48 417 aaPredicted RBP17.42■□□□□ 0.38
SMPDL3A-201ENST00000368440 CCDC196A0A1B0GTZ2 297 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 SGPL1O95470 568 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 HOXA13P31271 388 aaPredicted RBP17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 GHRHRQ02643 423 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 ANO1Q5XXA6 986 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 KATNBL1Q9H079 304 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 LARGE1O95461 756 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 LHX8Q68G74 356 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 WWC2Q6AWC2 1192 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 HEATR3Q7Z4Q2 680 aa17.41■□□□□ 0.38
SMPDL3A-201ENST00000368440 ASB14A6NK59 587 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 DTNBO60941 627 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 TRAF1Q13077 416 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 TYW1BQ6NUM6 668 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 CRISPLD2Q9H0B8 497 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 ADD3Q9UEY8 706 aaKnown RBP17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 DDX20Q9UHI6 824 aaKnown RBP17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 ZHX1Q9UKY1 873 aaPredicted RBP17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 CNPY2Q9Y2B0 182 aa17.4■□□□□ 0.38
SMPDL3A-201ENST00000368440 SEPT4O43236 478 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 SCRN1Q12765 414 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 ACVR2BQ13705 512 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 EEPD1Q7L9B9 569 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 MORC4Q8TE76 937 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 LENG1Q96BZ8 264 aaPredicted RBP17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 UPF2Q9HAU5 1272 aaKnown RBP17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 NRBP1Q9UHY1 535 aa17.39■□□□□ 0.38
SMPDL3A-201ENST00000368440 ADCY6O43306 1168 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 IFNAR1P17181 557 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 ANKRD1Q15327 319 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 PKN1Q16512 942 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 FBXO16Q8IX29 292 aaPredicted RBP17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 DNERQ8NFT8 737 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 TBC1D32Q96NH3 1257 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 MAF1Q9H063 256 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 ABHD16BQ9H3Z7 469 aa17.39■□□□□ 0.37
SMPDL3A-201ENST00000368440 GCOM1H8Y6P7 765 aaPredicted RBP17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 STXBP3O00186 592 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 PFKFB2O60825 505 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 TFRCP02786 760 aaKnown RBP17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 POLR2MP0CAP2 368 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 EDNRBP24530 442 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 ME3Q16798 604 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 USP17L6PQ6QN14 398 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 RMDN3Q96TC7 470 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 SLC26A6Q9BXS9 759 aa17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 MKI67P46013 3256 aaKnown RBP17.38■□□□□ 0.37
SMPDL3A-201ENST00000368440 MEIS2O14770 477 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 PRPF3O43395 683 aaKnown RBP17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 EIF2AK2P19525 551 aaKnown RBP17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 PFKFB3Q16875 520 aaPredicted RBP17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 FCHSD1Q86WN1 690 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 NECAB1Q8N987 351 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 RNF26Q9BY78 433 aaPredicted RBP17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 PXMP2Q9NR77 195 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 PDGFCQ9NRA1 345 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 OGDHLQ9ULD0 1010 aa17.37■□□□□ 0.37
SMPDL3A-201ENST00000368440 KIAA1217Q5T5P2 1943 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms