RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 INO80B-WBP1J3KQ70 363 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 RNMTO43148 476 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 STRNO43815 780 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 CCNB2O95067 398 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 GH1P01241 217 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SCG2P13521 617 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 VCLP18206 1134 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PHKA1P46020 1223 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 AARSP49588 968 aaKnown RBP eCLIP4.51□□□□□ -1.69
USH2A-202ENST00000366942 ATP8B2P98198 1209 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLFN13Q68D06 897 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PRPF40BQ6NWY9 871 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 CCDC149Q6ZUS6 474 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 CHMP1BQ7LBR1 199 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SRBD1Q8N5C6 995 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 APPL2Q8NEU8 664 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PPP1R14CQ8TAE6 165 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLC29A3Q9BZD2 475 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ACAD9Q9H845 621 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ARMT1Q9H993 441 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PALMDQ9NP74 551 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 CDV3Q9UKY7 258 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 ALG6Q9Y672 507 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PLSCR1O15162 318 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 STAT3P40763 770 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 GMCL1Q96IK5 515 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 TEKT3Q9BXF9 490 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 MROH8Q9H579 483 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 LRRC4Q9HBW1 653 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 KANSL3Q9P2N6 904 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SYNGAP1Q96PV0 1343 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ECE2O60344 883 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 BCAR3O75815 825 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLC10A5Q5PT55 438 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ANGEL2Q5VTE6 544 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 INCENPQ9NQS7 918 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PKD2L1Q9P0L9 805 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 KIAA1107Q9UPP5 1409 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 KIAA0232Q92628 1395 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PLEKHG1Q9ULL1 1385 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 FAM95CA0A1B0GW59 222 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 UBXN8O00124 270 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PQBP1O60828 265 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 ERLIN1O75477 346 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 HDAC4P56524 1084 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 CTDSPL2Q05D32 466 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLC39A6Q13433 755 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ZNF827Q17R98 1081 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 RILPL1Q5EBL4 403 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 FAM182BQ5T319 152 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PPP2R2DQ66LE6 453 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PPP1R2P3Q6NXS1 205 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 CEP128Q6ZU80 1094 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PPFIBP2Q8ND30 876 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ZNF512Q96ME7 567 aaPredicted RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 ACAP3Q96P50 834 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 EXOC1Q9NV70 894 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PALD1Q9ULE6 856 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 ERICH4A6NGS2 130 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 LAMTOR5O43504 91 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 AKR1A1P14550 325 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 MCM5P33992 734 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SCNN1DP51172 638 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 NRLP54845 237 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 AOC3Q16853 763 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SEPT14Q6ZU15 432 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 TRMT11Q7Z4G4 463 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 CEP57Q86XR8 500 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 GOLGA5Q8TBA6 731 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 NSUN6Q8TEA1 469 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 TMEM87BQ96K49 555 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 PNMA5Q96PV4 448 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 XPO6Q96QU8 1125 aaKnown RBP4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLC52A2Q9HAB3 445 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 SLC38A7Q9NVC3 462 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 STOML1Q9UBI4 398 aa4.51□□□□□ -1.69
USH2A-202ENST00000366942 MYMKA6NI61 221 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 PSAPP07602 524 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 ITGA6P23229 1130 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 CTNNB1P35222 781 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 LIG4P49917 911 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 ADCY7P51828 1080 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 SLC12A2P55011 1212 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 PER3P56645 1201 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 SOX10P56693 466 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 GIT2Q14161 759 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 RTN1Q16799 776 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 TBC1D25Q3MII6 688 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 ANKS3Q6ZW76 656 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 WDR63Q8IWG1 891 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 SKA2Q8WVK7 121 aaPredicted RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 TFB1MQ8WVM0 346 aaKnown RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 AHCYL2Q96HN2 611 aaKnown RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 SENP6Q9GZR1 1112 aaPredicted RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 RGL1Q9NZL6 768 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 LARSQ9P2J5 1176 aaKnown RBP4.5□□□□□ -1.69
USH2A-202ENST00000366942 PRR12Q9ULL5 1215 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 ERBB3P21860 1342 aa4.5□□□□□ -1.69
USH2A-202ENST00000366942 MAGEB2O15479 319 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms