RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 RAD21O60216 631 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 KCNA5P22460 613 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 COPB2P35606 906 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 GPNMBQ14956 572 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 TAPT1Q6NXT6 567 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 FAM133AQ8N9E0 248 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 SSH3Q8TE77 659 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 CRNKL1Q9BZJ0 848 aaKnown RBP10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 SH2D4AQ9H788 454 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 ARMT1Q9H993 441 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 SWAP70Q9UH65 585 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 PTPRSQ13332 1948 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZNF532Q9HCE3 1301 aa10.26□□□□□ -0.77
HMGB1P39-201ENST00000366304 SPTBN4Q9H254 2564 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 GRXCR2A6NFK2 248 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 CABYRO75952 493 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 SSTR3P32745 418 aaPredicted RBP10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 RARSP54136 660 aaKnown RBP10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 SLC9C2Q5TAH2 1124 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 C12orf60Q5U649 245 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 NOL8Q76FK4 1167 aaKnown RBP10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 PRSS33Q8NF86 280 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 PHOSPHO2Q8TCD6 241 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 PURBQ96QR8 312 aaKnown RBP10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 SLC9A7Q96T83 725 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 C1orf115Q9H7X2 142 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 SUGCTQ9HAC7 445 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 MTUS1Q9ULD2 1270 aa10.25□□□□□ -0.77
HMGB1P39-201ENST00000366304 DCXO43602 365 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 SURF6O75683 361 aaKnown RBP10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 NDUFB10O96000 172 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 PFKMP08237 780 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 IQCF3P0C7M6 154 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 TRIM27P14373 513 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 DEFB103AP81534 67 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 OS9Q13438 667 aaPredicted RBP10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 PTCRAQ6ISU1 281 aaPredicted RBP10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 C16orf86Q6ZW13 317 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 ANKRD35Q8N283 1001 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 CTAGE1Q96RT6 745 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 KANSL2Q9H9L4 492 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 SLC38A10Q9HBR0 1119 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 GOPCQ9HD26 462 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 TSHZ2Q9NRE2 1034 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 HOMER2Q9NSB8 354 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 NOP58Q9Y2X3 529 aaKnown RBP10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 TNKSO95271 1327 aa10.24□□□□□ -0.77
HMGB1P39-201ENST00000366304 USP17L12C9JPN9 530 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 USP17L21D6R901 530 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 F5H6K3 240 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 H3BQ06 376 aaPredicted RBP10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 ALADP13716 330 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 ATP8B2P98198 1209 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 KLRC3Q07444 240 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 CSPP1Q1MSJ5 1256 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 EEPD1Q7L9B9 569 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 FBXO16Q8IX29 292 aaPredicted RBP10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 TET1Q8NFU7 2136 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 NEK9Q8TD19 979 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 ARHGAP45Q92619 1136 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 KIFC2Q96AC6 838 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 CCDC17Q96LX7 622 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 ALG13Q9NP73 1137 aaKnown RBP10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 A1CFQ9NQ94 594 aaKnown RBP10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 LMCD1Q9NZU5 365 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZDBF2Q9HCK1 2354 aa10.23□□□□□ -0.77
HMGB1P39-201ENST00000366304 LINC01553A4QN01 128 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 MBD4O95243 580 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 ERVK-21P61565 698 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 WDR5P61964 334 aaKnown RBP10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 PURAQ00577 322 aaKnown RBP10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZP2Q05996 745 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 PRPF38AQ8NAV1 312 aaKnown RBP10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 CLUAP1Q96AJ1 413 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 FTOQ9C0B1 505 aaKnown RBP eCLIP10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 AP5M1Q9H0R1 490 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 KCNH6Q9H252 994 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 GREB1LQ9C091 1923 aaPredicted RBP10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZNF536O15090 1300 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 C5orf42Q9H799 3197 aa10.22□□□□□ -0.77
HMGB1P39-201ENST00000366304 ACTN1P12814 892 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 RASA1P20936 1047 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 IRS1P35568 1242 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 CAMK2BQ13554 666 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 NBPF20Q3BBV1 942 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 CTR9Q6PD62 1173 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 TMED8Q6PL24 325 aaPredicted RBP10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 TMEM57Q8N5G2 664 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 CHST13Q8NET6 341 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 C17orf80Q9BSJ5 609 aa10.21□□□□□ -0.77
HMGB1P39-201ENST00000366304 ZBED9Q6R2W3 1325 aa10.21□□□□□ -0.78
HMGB1P39-201ENST00000366304 BAZ2AQ9UIF9 1905 aaKnown RBP10.21□□□□□ -0.78
HMGB1P39-201ENST00000366304 IGKV6D-41A0A0C4DH26 115 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 KIF28PB7ZC32 967 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 GOLIM4O00461 696 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 ZBED4O75132 1171 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 RFC2P35250 354 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 SNAP25P60880 206 aa10.2□□□□□ -0.78
HMGB1P39-201ENST00000366304 TCF15Q12870 199 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms