RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KINO60870 393 aaKnown RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 PRRT2Q7Z6L0 340 aaPredicted RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 CPXCR1Q8N123 301 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 ZNF526Q8TF50 670 aaPredicted RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 CSRNP2Q9H175 543 aa21.24■□□□□ 0.99
CLN3-204ENST00000357857 RAVER2Q9HCJ3 691 aaKnown RBP21.24■□□□□ 0.99
CLN3-204ENST00000357857 UNCXA6NJT0 531 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 SPDYE3A6NKU9 549 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 OPTNQ96CV9 577 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 FAM13BQ9NYF5 915 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 KCNH4Q9UQ05 1017 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 HPSEQ9Y251 543 aa21.23■□□□□ 0.99
CLN3-204ENST00000357857 MYPNQ86TC9 1320 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 GCOM1H8Y6P7 765 aaPredicted RBP21.22■□□□□ 0.99
CLN3-204ENST00000357857 NEMFO60524 1076 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 CFBP00751 764 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 POLR2MP0CAP2 368 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 HOXA13P31271 388 aaPredicted RBP21.22■□□□□ 0.99
CLN3-204ENST00000357857 FKBP1BP68106 108 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 SPECC1Q5M775 1068 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 GADL1Q6ZQY3 521 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 PROCA1Q8NCQ7 364 aaPredicted RBP21.22■□□□□ 0.99
CLN3-204ENST00000357857 TMEM60Q9H2L4 133 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 TNMDQ9H2S6 317 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 ADAMTS5Q9UNA0 930 aa21.22■□□□□ 0.99
CLN3-204ENST00000357857 VWA3AA6NCI4 1184 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 EDIL3O43854 480 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 CAMK4Q16566 473 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 TREML2Q5T2D2 321 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 WNK4Q96J92 1243 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 P2RX7Q99572 595 aaKnown RBP21.21■□□□□ 0.99
CLN3-204ENST00000357857 NAP1L4Q99733 375 aaKnown RBP21.21■□□□□ 0.99
CLN3-204ENST00000357857 HOXC10Q9NYD6 342 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 TRPM7Q96QT4 1865 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 ALAS1P13196 640 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 PRPHP41219 470 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 SYKP43405 635 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 PPP4R3AQ6IN85 833 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 REPS2Q8NFH8 660 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 TBC1D5Q92609 795 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 SLC10A4Q96EP9 437 aa21.21■□□□□ 0.99
CLN3-204ENST00000357857 GBA2Q9HCG7 927 aaPredicted RBP21.21■□□□□ 0.99
CLN3-204ENST00000357857 ZNF202O95125 648 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 TDP2O95551 362 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 OR52Z1P0C646 297 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 GCFC2P16383 781 aaKnown RBP21.2■□□□□ 0.98
CLN3-204ENST00000357857 USP11P51784 963 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 OAZ1P54368 228 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 IL17AQ16552 155 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 LRSAM1Q6UWE0 723 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 DTHD1Q6ZMT9 781 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 KCNH3Q9ULD8 1083 aa21.2■□□□□ 0.98
CLN3-204ENST00000357857 SPDYE16A6NNV3 312 aaPredicted RBP21.19■□□□□ 0.98
CLN3-204ENST00000357857 SREBF1P36956 1147 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 FCHSD1Q86WN1 690 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 POTEDQ86YR6 584 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 MCF2L2Q86YR7 1114 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 CLEC4DQ8WXI8 215 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 A0A0G2JMZ2 1700 aa21.19■□□□□ 0.98
CLN3-204ENST00000357857 CTAGE5O15320 804 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 CELF2O95319 508 aaKnown RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 HOXA7P31268 230 aaPredicted RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 LONP1P36776 959 aaKnown RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 ARHGAP4P98171 946 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 C2orf69Q8N8R5 385 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 CRYGNQ8WXF5 182 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 SLC37A4O43826 429 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 GJA5P36382 358 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 HSD17B4P51659 736 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 CALCRLQ16602 461 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 RBM43Q6ZSC3 357 aaKnown RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 SYMPKQ92797 1274 aaKnown RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 TIGD1Q96MW7 591 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 EHMT1Q9H9B1 1298 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 HOMER2Q9NSB8 354 aa21.18■□□□□ 0.98
CLN3-204ENST00000357857 DDX25Q9UHL0 483 aaKnown RBP21.18■□□□□ 0.98
CLN3-204ENST00000357857 NFIBO00712 420 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 ATP2A1O14983 1001 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 GHRHRQ02643 423 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 MUM1L1Q5H9M0 696 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 CHADLQ6NUI6 762 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 MOXD1Q6UVY6 613 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 USP49Q70CQ1 688 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 FASTKD5Q7L8L6 764 aaKnown RBP21.17■□□□□ 0.98
CLN3-204ENST00000357857 GAS2L3Q86XJ1 694 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 SAMD3Q8N6K7 520 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 EPSTI1Q96J88 318 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 TRERF1Q96PN7 1200 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 ZNF214Q9UL59 606 aaPredicted RBP21.17■□□□□ 0.98
CLN3-204ENST00000357857 AGTPBP1Q9UPW5 1226 aa21.17■□□□□ 0.98
CLN3-204ENST00000357857 CYP3A7-CYP3A51PA0A087WV96 503 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 CYP3A7P24462 503 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 SNAPC2Q13487 334 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 TMEM132BQ14DG7 1078 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 SNRNP48Q6IEG0 339 aaKnown RBP21.16■□□□□ 0.98
CLN3-204ENST00000357857 MTMR9Q96QG7 549 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 SDF4Q9BRK5 362 aa21.16■□□□□ 0.98
CLN3-204ENST00000357857 GOLGA6L3A6NEY3 463 aa21.15■□□□□ 0.98
CLN3-204ENST00000357857 IRX3P78415 501 aaPredicted RBP21.15■□□□□ 0.98
CLN3-204ENST00000357857 MOGSQ13724 837 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms