RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 RTN1Q16799 776 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 LHX8Q68G74 356 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 TMTC3Q6ZXV5 915 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 SRBD1Q8N5C6 995 aaKnown RBP19.66■□□□□ 0.74
CLN3-203ENST00000357806 ABHD16BQ9H3Z7 469 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 NAP1L2Q9ULW6 460 aaPredicted RBP19.66■□□□□ 0.74
CLN3-203ENST00000357806 PCDHA1Q9Y5I3 950 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 ASTN1O14525 1302 aa19.66■□□□□ 0.74
CLN3-203ENST00000357806 LOC102724159A0A0B4J2E5 919 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 GOLGA8AA7E2F4 631 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 GOLGA8BA8MQT2 603 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 SNAI1O95863 264 aaPredicted RBP19.65■□□□□ 0.74
CLN3-203ENST00000357806 ALDH5A1P51649 535 aaPredicted RBP19.65■□□□□ 0.74
CLN3-203ENST00000357806 APOBRQ0VD83 1088 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 PWP2Q15269 919 aaKnown RBP19.65■□□□□ 0.74
CLN3-203ENST00000357806 PIBF1Q8WXW3 757 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 ZHX1Q9UKY1 873 aaPredicted RBP19.65■□□□□ 0.74
CLN3-203ENST00000357806 NID2Q14112 1375 aa19.65■□□□□ 0.74
CLN3-203ENST00000357806 ZNF865P0CJ78 1059 aaPredicted RBP19.64■□□□□ 0.73
CLN3-203ENST00000357806 AKR1A1P14550 325 aa19.64■□□□□ 0.73
CLN3-203ENST00000357806 C8orf34Q49A92 452 aa19.64■□□□□ 0.73
CLN3-203ENST00000357806 CMTR1Q8N1G2 835 aaKnown RBP19.64■□□□□ 0.73
CLN3-203ENST00000357806 DNERQ8NFT8 737 aa19.64■□□□□ 0.73
CLN3-203ENST00000357806 PURBQ96QR8 312 aaKnown RBP19.64■□□□□ 0.73
CLN3-203ENST00000357806 MPHOSPH6Q99547 160 aaKnown RBP19.64■□□□□ 0.73
CLN3-203ENST00000357806 METAP2P50579 478 aaKnown RBP eCLIP19.63■□□□□ 0.73
CLN3-203ENST00000357806 ACVR2BQ13705 512 aa19.63■□□□□ 0.73
CLN3-203ENST00000357806 PPP2R5BQ15173 497 aa19.63■□□□□ 0.73
CLN3-203ENST00000357806 UPF3BQ9BZI7 483 aaKnown RBP19.63■□□□□ 0.73
CLN3-203ENST00000357806 CNTNAP5Q8WYK1 1306 aa19.63■□□□□ 0.73
CLN3-203ENST00000357806 CCDC196A0A1B0GTZ2 297 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 SEC24BO95487 1268 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 CFBP00751 764 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 RARBP10826 455 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 GHRHRQ02643 423 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 ANO1Q5XXA6 986 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 UBE2Q1Q7Z7E8 422 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 CCDC82Q8N4S0 544 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 SAMD3Q8N6K7 520 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 MAP3K20Q9NYL2 800 aaKnown RBP19.62■□□□□ 0.73
CLN3-203ENST00000357806 PDE4DIPQ5VU43 2346 aa19.62■□□□□ 0.73
CLN3-203ENST00000357806 B4DLN1 442 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 OPLAHO14841 1288 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 HSD17B4P51659 736 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 MRPL12P52815 198 aaKnown RBP19.61■□□□□ 0.73
CLN3-203ENST00000357806 MORC4Q8TE76 937 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 KATNBL1Q9H079 304 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 FAM184BQ9ULE4 1060 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 MYH7BA7E2Y1 1941 aa19.61■□□□□ 0.73
CLN3-203ENST00000357806 TOB2Q14106 344 aaPredicted RBP19.6■□□□□ 0.73
CLN3-203ENST00000357806 NECAB2Q7Z6G3 386 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 SYTL5Q8TDW5 730 aaPredicted RBP19.6■□□□□ 0.73
CLN3-203ENST00000357806 TBC1D5Q92609 795 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 PDRG1Q9NUG6 133 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 CDC27P30260 824 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 EVCP57679 992 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 CCDC144BQ3MJ40 725 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 DIS3LQ8TF46 1054 aaKnown RBP19.6■□□□□ 0.73
CLN3-203ENST00000357806 IL17RAQ96F46 866 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 PAWRQ96IZ0 340 aaKnown RBP19.6■□□□□ 0.73
CLN3-203ENST00000357806 VTA1Q9NP79 307 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 XPNPEP3Q9NQH7 507 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 COL20A1Q9P218 1284 aa19.6■□□□□ 0.73
CLN3-203ENST00000357806 DNM1LO00429 736 aa19.59■□□□□ 0.73
CLN3-203ENST00000357806 PDE4DQ08499 809 aa19.59■□□□□ 0.73
CLN3-203ENST00000357806 FBXO16Q8IX29 292 aaPredicted RBP19.59■□□□□ 0.73
CLN3-203ENST00000357806 ARRDC4Q8NCT1 418 aa19.59■□□□□ 0.73
CLN3-203ENST00000357806 NSUN6Q8TEA1 469 aaKnown RBP19.59■□□□□ 0.73
CLN3-203ENST00000357806 RMDN3Q96TC7 470 aa19.59■□□□□ 0.73
CLN3-203ENST00000357806 FAM217BQ9NTX9 383 aaPredicted RBP19.59■□□□□ 0.73
CLN3-203ENST00000357806 DDX49Q9Y6V7 483 aaKnown RBP19.59■□□□□ 0.73
CLN3-203ENST00000357806 GCOM1H8Y6P7 765 aaPredicted RBP19.58■□□□□ 0.72
CLN3-203ENST00000357806 POLR2MP0CAP2 368 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 EDNRBP24530 442 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 MNX1P50219 401 aaPredicted RBP19.58■□□□□ 0.72
CLN3-203ENST00000357806 FUT2Q10981 343 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 EEPD1Q7L9B9 569 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 TAAR1Q96RJ0 339 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 HTATIP2Q9BUP3 242 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 C11orf49Q9H6J7 331 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 GTF3C3Q9Y5Q9 886 aa19.58■□□□□ 0.72
CLN3-203ENST00000357806 hCG_1642624A0A1W2PR95 340 aa19.57■□□□□ 0.72
CLN3-203ENST00000357806 KBTBD13C9JR72 458 aa19.57■□□□□ 0.72
CLN3-203ENST00000357806 DUSP11O75319 330 aaKnown RBP19.57■□□□□ 0.72
CLN3-203ENST00000357806 PDIA3P30101 505 aaKnown RBP19.57■□□□□ 0.72
CLN3-203ENST00000357806 ADD1P35611 737 aaKnown RBP19.57■□□□□ 0.72
CLN3-203ENST00000357806 ARHGEF16Q5VV41 709 aa19.57■□□□□ 0.72
CLN3-203ENST00000357806 HEATR3Q7Z4Q2 680 aa19.57■□□□□ 0.72
CLN3-203ENST00000357806 LENG1Q96BZ8 264 aaPredicted RBP19.57■□□□□ 0.72
CLN3-203ENST00000357806 IWS1Q96ST2 819 aa19.57■□□□□ 0.72
CLN3-203ENST00000357806 SYNRGQ9UMZ2 1314 aa19.56■□□□□ 0.72
CLN3-203ENST00000357806 hCG_1984214I3L0E3 225 aa19.56■□□□□ 0.72
CLN3-203ENST00000357806 MYCNP04198 464 aaPredicted RBP19.56■□□□□ 0.72
CLN3-203ENST00000357806 HOXA13P31271 388 aaPredicted RBP19.56■□□□□ 0.72
CLN3-203ENST00000357806 GJC2Q5T442 439 aaPredicted RBP19.56■□□□□ 0.72
CLN3-203ENST00000357806 RNF180Q86T96 592 aa19.56■□□□□ 0.72
CLN3-203ENST00000357806 ZNF713Q8N859 430 aaPredicted RBP19.56■□□□□ 0.72
CLN3-203ENST00000357806 CUL5Q93034 780 aa19.56■□□□□ 0.72
CLN3-203ENST00000357806 ZNF274Q96GC6 653 aaPredicted RBP19.56■□□□□ 0.72
CLN3-203ENST00000357806 PXMP2Q9NR77 195 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms