RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 LMNB2Q03252 620 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 ICA1Q05084 483 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 NOD1Q9Y239 953 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PHLPP2Q6ZVD8 1323 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 DDX39AO00148 427 aaKnown RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 BTDP43251 543 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 KIF11P52732 1056 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 IRX4P78413 519 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 IRX3P78415 501 aaPredicted RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PRR16Q569H4 304 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PDZD4Q76G19 769 aaPredicted RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 ENOX1Q8TC92 643 aaKnown RBP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 USTQ9Y2C2 406 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 CLIC4Q9Y696 253 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 M0QZ92 97 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PPIP5K2O43314 1243 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PDE6CP51160 858 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 PABPC4Q13310 644 aaKnown RBP eCLIP12.88□□□□□ -0.35
COL9A1-202ENST00000357250 LONRF3Q496Y0 759 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 LINC00301Q8NCQ3 95 aa12.88□□□□□ -0.35
COL9A1-202ENST00000357250 STX2P32856 288 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 KIF23Q02241 960 aaPredicted RBP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 SLFN13Q68D06 897 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 NLGN1Q8N2Q7 840 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 TUBGCP2Q9BSJ2 902 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 EIF3CLB5ME19 914 aaKnown RBP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 KCNQ2O43526 872 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 HSPA6P17066 643 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 PCK1P35558 622 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 ERFEQ4G0M1 354 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 EIF3CQ99613 913 aaKnown RBP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 ADAMTS13Q76LX8 1427 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 THAP12O43422 761 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 CNGA1P29973 690 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 LIG4P49917 911 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 EXOC3L4Q17RC7 722 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 C10orf76Q5T2E6 689 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 LARP4BQ92615 738 aaKnown RBP12.87□□□□□ -0.35
COL9A1-202ENST00000357250 OSBP2Q969R2 916 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 MTA3Q9BTC8 594 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 RFX7Q2KHR2 1363 aa12.87□□□□□ -0.35
COL9A1-202ENST00000357250 PRKAB2O43741 272 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 TNNC2P02585 160 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 RAD51AP2Q09MP3 1159 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ZSCAN26Q16670 478 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 GEN1Q17RS7 908 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 DOK7Q18PE1 504 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PLA2G4DQ86XP0 818 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 JPH2Q9BR39 696 aaPredicted RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 WDR11Q9BZH6 1224 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PUS7LQ9H0K6 701 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 KLHL14Q9P2G3 628 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 CHGBP05060 677 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ATF7P17544 494 aaPredicted RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 CYP2J2P51589 502 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PSMD2Q13200 908 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PPP2R5AQ15172 486 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 MAN2A1Q16706 1144 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 SUSD4Q5VX71 490 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 MAEAQ7L5Y9 396 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 GAS2L3Q86XJ1 694 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 RSAD2Q8WXG1 361 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PSMB7Q99436 277 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PASKQ96RG2 1323 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 SH3BGRP55822 239 aaPredicted RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 FKBP3Q00688 224 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF658Q5TYW1 1059 aaPredicted RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 CCDC170Q8IYT3 715 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 CNOT6LQ96LI5 555 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 VPS37BQ9H9H4 285 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 IFT122Q9HBG6 1241 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 NBPF26B4DH59 902 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 K7ENM7 598 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 M0R2C6 588 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PRPF3O43395 683 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 MMP1P03956 469 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 SCNN1DP51172 638 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ZNF131P52739 623 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 POLR2FP61218 127 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 LRMPQ12912 555 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ARHGEF16Q5VV41 709 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 ARL6IP4Q66PJ3 421 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 NBPF10Q6P3W6 841 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 NBPF15Q8N660 670 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 P2RX5Q93086 422 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 GPR101Q96P66 508 aaPredicted RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 DESI2Q9BSY9 194 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 QTRT2Q9H974 415 aaKnown RBP12.86□□□□□ -0.35
COL9A1-202ENST00000357250 FAM114A2Q9NRY5 505 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 PCDHA1Q9Y5I3 950 aa12.86□□□□□ -0.35
COL9A1-202ENST00000357250 IGSF3O75054 1194 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 BBOX1O75936 387 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 CA8P35219 290 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 NAA25Q14CX7 972 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 CLIC6Q96NY7 704 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 RAB3IPQ96QF0 476 aaPredicted RBP12.85□□□□□ -0.35
COL9A1-202ENST00000357250 ADPGKQ9BRR6 497 aa12.85□□□□□ -0.35
COL9A1-202ENST00000357250 RIMBP3CA6NJZ7 1639 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms