RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 KDM3AQ9Y4C1 1321 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 EVI5O60447 810 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 PHBP35232 272 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 EXOC3L4Q17RC7 722 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 TOGARAM2Q6ZUX3 1019 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 NLRP1Q9C000 1473 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 DDX39AO00148 427 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 ATF2P15336 505 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 MAPKAPK5Q8IW41 473 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 CCT6BQ92526 530 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 P2RX5Q93086 422 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 PNMA1Q8ND90 353 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 PPP1R9AQ9ULJ8 1098 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 RABGAP1Q9Y3P9 1069 aa21.36■■□□□ 1.01
CCDC88B-202ENST00000356786 MAN1A1P33908 653 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 OSBPL5Q9H0X9 879 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 NHEJ1Q9H9Q4 299 aaPredicted RBP21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 PTPN22Q9Y2R2 807 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 MED23Q9ULK4 1368 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 MFAP3LO75121 409 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 TPH2Q8IWU9 490 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 WHAMMQ8TF30 809 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 METTL14Q9HCE5 456 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 POC1B-GALNT4F8VUJ3 575 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 SLCO1A2P46721 670 aa21.35■■□□□ 1.01
CCDC88B-202ENST00000356786 CRCPO75575 148 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 EIF4A3P38919 411 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 CNOT10Q9H9A5 744 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 TBC1D1Q86TI0 1168 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 RSAD2Q8WXG1 361 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 DDX27Q96GQ7 796 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 NFU1Q9UMS0 254 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 FAF1Q9UNN5 650 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 BZW2Q9Y6E2 419 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 MAST3O60307 1309 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 ZNF658Q5TYW1 1059 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 CLASP1Q7Z460 1538 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 Q9H521 79 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 BCORL1Q5H9F3 1711 aa21.34■■□□□ 1.01
CCDC88B-202ENST00000356786 HMGB1P1B2RPK0 211 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 AIFM3Q96NN9 605 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 PFDN4Q9NQP4 134 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 CDC25AP30304 524 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 POLE2P56282 527 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 MRPS9P82933 396 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 STRN3Q13033 797 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 AFAP1L2Q8N4X5 818 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 RNF17Q9BXT8 1623 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 ZBTB22O15209 634 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 STK10O94804 968 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 ATF7P17544 494 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 USH1GQ495M9 461 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 BSPRYQ5W0U4 402 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 PPP4R1Q8TF05 950 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 RNF26Q9BY78 433 aaPredicted RBP21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 VCX3AQ9NNX9 186 aa21.33■■□□□ 1.01
CCDC88B-202ENST00000356786 MESDQ14696 234 aa21.33■■□□□ 1
CCDC88B-202ENST00000356786 MAN2A1Q16706 1144 aa21.33■■□□□ 1
CCDC88B-202ENST00000356786 TMCO4Q5TGY1 634 aa21.33■■□□□ 1
CCDC88B-202ENST00000356786 ZNF148Q9UQR1 794 aa21.33■■□□□ 1
CCDC88B-202ENST00000356786 TMEM232C9JQI7 657 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 TCIRG1Q13488 830 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 TCP11X2Q5H9J9 407 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 TGFBRAP1Q8WUH2 860 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 ATP8A2Q9NTI2 1148 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 RWDD2AQ9UIY3 292 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 KLRF2D3W0D1 207 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 FMNL1O95466 1100 aaPredicted RBP21.32■■□□□ 1
CCDC88B-202ENST00000356786 SERPINB6P35237 376 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 DNAJC10Q8IXB1 793 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 PI4K2BQ8TCG2 481 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 C8orf37Q96NL8 207 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 PDCD7Q8N8D1 485 aaKnown RBP21.32■■□□□ 1
CCDC88B-202ENST00000356786 GJA10Q969M2 543 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 ARPP21Q9UBL0 812 aaPredicted RBP21.32■■□□□ 1
CCDC88B-202ENST00000356786 DCAF8L1A6NGE4 600 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 ZWINTO95229 277 aa21.32■■□□□ 1
CCDC88B-202ENST00000356786 GGCXP38435 758 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 TRAPPC10P48553 1259 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 UBE3CQ15386 1083 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 MAGEF1Q9HAY2 307 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 ST7Q9NRC1 585 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 RAB20Q9NX57 234 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 CFBP00751 764 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 KRT31Q15323 416 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 BBOF1Q8ND07 529 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 SCOCQ9UIL1 159 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 TNNI1P19237 187 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 PPM1KQ8N3J5 372 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 SLAIN2Q9P270 581 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 DAPK3O43293 454 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 NEK9Q8TD19 979 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 SMCR8Q8TEV9 937 aaPredicted RBP21.31■■□□□ 1
CCDC88B-202ENST00000356786 FBXO41Q8TF61 875 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 CUEDC2Q9H467 287 aa21.31■■□□□ 1
CCDC88B-202ENST00000356786 SPHKAPQ2M3C7 1700 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 SRGAP2O75044 1071 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 MMP1P03956 469 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 GOLGA8HP0CJ92 632 aa21.3■■□□□ 1
CCDC88B-202ENST00000356786 ANKRD35Q8N283 1001 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms