RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 SMCHD1A6NHR9 2005 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 CEP250Q9BV73 2442 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 ROBO3Q96MS0 1386 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 H3BQ06 376 aaPredicted RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 IDH1O75874 414 aaKnown RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 ZNF865P0CJ78 1059 aaPredicted RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 RHBDL3P58872 404 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 CCNA1P78396 465 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 HMGN5P82970 282 aaKnown RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 KCNA10Q16322 511 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 CAVIN4Q5BKX8 364 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 LBX2Q6XYB7 198 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 DPP9Q86TI2 863 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 NECAB1Q8N987 351 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 WDR66Q8TBY9 1149 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 EDAQ92838 391 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 BRF1Q92994 677 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 RMDN1Q96DB5 314 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 MAML3Q96JK9 1138 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 TCEANC2Q96MN5 208 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 STRBPQ96SI9 672 aaKnown RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 PRRX2Q99811 253 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 LARP6Q9BRS8 491 aaKnown RBP9.56□□□□□ -0.88
CD44-205ENST00000352818 DNAJC18Q9H819 358 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 AS3MTQ9HBK9 375 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 KIF3AQ9Y496 699 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 SALL1Q9NSC2 1324 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 SYNRGQ9UMZ2 1314 aa9.56□□□□□ -0.88
CD44-205ENST00000352818 COL4A4P53420 1690 aaPredicted RBP9.55□□□□□ -0.88
CD44-205ENST00000352818 TCHHQ07283 1943 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 LCHNA4D1U4 455 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 TMEM221A6NGB7 291 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 C19orf81C9J6K1 198 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 H0Y858 1186 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 M0R296 226 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 PRPF40AO75400 957 aaKnown RBP9.55□□□□□ -0.88
CD44-205ENST00000352818 MCM5P33992 734 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 CCL23P55773 120 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 LARP1BQ659C4 914 aaKnown RBP9.55□□□□□ -0.88
CD44-205ENST00000352818 ADHFE1Q8IWW8 467 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 NCOA7Q8NI08 942 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 GPT2Q8TD30 523 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 PBXIP1Q96AQ6 731 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 MTA3Q9BTC8 594 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 MOV10L1Q9BXT6 1211 aaKnown RBP9.55□□□□□ -0.88
CD44-205ENST00000352818 GZF1Q9H116 711 aaPredicted RBP9.55□□□□□ -0.88
CD44-205ENST00000352818 TLR9Q9NR96 1032 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 DENND2AQ9ULE3 1009 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 IVNS1ABPQ9Y6Y0 642 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 KMT2EQ8IZD2 1858 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 ZNF536O15090 1300 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 ELP1O95163 1332 aa9.55□□□□□ -0.88
CD44-205ENST00000352818 ZNF236Q9UL36 1845 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 NID2Q14112 1375 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 SPDYE16A6NNV3 312 aaPredicted RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 ZBBXA8MT70 800 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 PATL2C9JE40 543 aaKnown RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 USP17L10C9JJH3 530 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 ARVCFO00192 962 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 ZNF213O14771 459 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 LDHBP07195 334 aaKnown RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 HOXB3P14651 431 aaPredicted RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 FGD1P98174 961 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 SCRN1Q12765 414 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 CATSPERGQ6ZRH7 1159 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 TRIM67Q6ZTA4 783 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 MAGEB6Q8N7X4 407 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 NSUN7Q8NE18 718 aaKnown RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 ZNF384Q8TF68 577 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 NUP133Q8WUM0 1156 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 SYAP1Q96A49 352 aaPredicted RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 NOC4LQ9BVI4 516 aaKnown RBP9.54□□□□□ -0.88
CD44-205ENST00000352818 LMCD1Q9NZU5 365 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 UNC79Q9P2D8 2635 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 MROH7Q68CQ1 1323 aa9.54□□□□□ -0.88
CD44-205ENST00000352818 FRYLO94915 3013 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 ASPMQ8IZT6 3477 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 VPS37CA5D8V6 355 aaPredicted RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 MOXD2PA6NHM9 499 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 ADCY6O43306 1168 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 NPM3O75607 178 aaKnown RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 MBD4O95243 580 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 NCLP19338 710 aaKnown RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 NBL1P41271 181 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 UBE2HP62256 183 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 APOBRQ0VD83 1088 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 TRDNQ13061 729 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 ZSCAN23Q3MJ62 389 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 FOXD4L5Q5VV16 416 aaPredicted RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 NAA16Q6N069 864 aaPredicted RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 RALYLQ86SE5 291 aaKnown RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 RNF135Q8IUD6 432 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 FBXL6Q8N531 539 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 FOXD4L4Q8WXT5 416 aaPredicted RBP9.53□□□□□ -0.88
CD44-205ENST00000352818 C12orf42Q96LP6 360 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 AGBL1Q96MI9 1066 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 HIPK3Q9H422 1215 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 CNNM2Q9H8M5 875 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 SUGCTQ9HAC7 445 aa9.53□□□□□ -0.88
CD44-205ENST00000352818 GRPEL1Q9HAV7 217 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms