RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NUDT12Q9BQG2 462 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 hCG_1984214I3L0E3 225 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 PPP2R3AQ06190 1150 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 SEMA3FQ13275 785 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 STIM1Q13586 685 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 CALCRLQ16602 461 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 SHROOM1Q2M3G4 852 aaPredicted RBP17.31■□□□□ 0.36
UPF3B-202ENST00000345865 CSGALNACT2Q8N6G5 542 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 ZNF713Q8N859 430 aaPredicted RBP17.31■□□□□ 0.36
UPF3B-202ENST00000345865 P2RX5Q93086 422 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 DNAJC18Q9H819 358 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 COL11A2P13942 1736 aaPredicted RBP17.31■□□□□ 0.36
UPF3B-202ENST00000345865 NRXN2Q9P2S2 1712 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 GREB1LQ9C091 1923 aaPredicted RBP17.31■□□□□ 0.36
UPF3B-202ENST00000345865 POTEMA6NI47 508 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 RASSF10A6NK89 507 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 NPR1P16066 1061 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 CCNE1P24864 410 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 ARHGAP25P42331 645 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 TRIM14Q14142 442 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 CYP26C1Q6V0L0 522 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 KCTD1Q719H9 257 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 EXOC1Q9NV70 894 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 LRWD1Q9UFC0 647 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 SWAP70Q9UH65 585 aa17.31■□□□□ 0.36
UPF3B-202ENST00000345865 PNMA6FA0A0J9YX94 578 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 MYMKA6NI61 221 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 B4DLN1 442 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 FXR2P51116 673 aaKnown RBP eCLIP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 ORC2Q13416 577 aaPredicted RBP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 MCM6Q14566 821 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 GJA10Q969M2 543 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 REXO2Q9Y3B8 237 aaKnown RBP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 MYH7BA7E2Y1 1941 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 A0A1W2PQC6 194 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 USP17L10C9JJH3 530 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 PES1O00541 588 aaKnown RBP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 CLK2P49760 499 aaKnown RBP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 CACNB3P54284 484 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 ZNF569Q5MCW4 686 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 WDR59Q6PJI9 974 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 HHIPL2Q6UWX4 724 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 RSRC2Q7L4I2 434 aaKnown RBP17.3■□□□□ 0.36
UPF3B-202ENST00000345865 SLF1Q9BQI6 1058 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 TUBGCP2Q9BSJ2 902 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 DBNDD1Q9H9R9 158 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 RIC8AQ9NPQ8 531 aa17.3■□□□□ 0.36
UPF3B-202ENST00000345865 FAM196BA6NMK8 535 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 MPHOSPH10O00566 681 aaKnown RBP17.29■□□□□ 0.36
UPF3B-202ENST00000345865 TNNI2P48788 182 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 KLK7P49862 253 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 ATP2B2Q01814 1243 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 KCNK18Q7Z418 384 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 TEKT1Q969V4 418 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 CALML4Q96GE6 196 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 SEMA6BQ9H3T3 888 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 SLC39A2Q9NP94 309 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 MYO3BQ8WXR4 1341 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 SIPA1L1O43166 1804 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 KIF5CO60282 957 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 TFRCP02786 760 aaKnown RBP17.29■□□□□ 0.36
UPF3B-202ENST00000345865 NLGN1Q8N2Q7 840 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 DNAJC7Q99615 494 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 FHOD1Q9Y613 1164 aa17.29■□□□□ 0.36
UPF3B-202ENST00000345865 ECM1Q16610 540 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 MIIPQ5JXC2 388 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 SV2BQ7L1I2 683 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 SLC35F6Q8N357 371 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 HAS1Q92839 578 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 MTMR8Q96EF0 704 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 CNOT6LQ96LI5 555 aaKnown RBP17.28■□□□□ 0.36
UPF3B-202ENST00000345865 TTYH3Q9C0H2 523 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 AGPAT5Q9NUQ2 364 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 CAPN11Q9UMQ6 739 aa17.28■□□□□ 0.36
UPF3B-202ENST00000345865 ZRANB2O95218 330 aaKnown RBP eCLIP17.27■□□□□ 0.36
UPF3B-202ENST00000345865 CRKP46108 304 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 AMPD3Q01432 767 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 DYMQ7RTS9 669 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 OR8K1Q8NGG5 319 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 AKT1S1Q96B36 256 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 MAGEC2Q9UBF1 373 aaPredicted RBP17.27■□□□□ 0.36
UPF3B-202ENST00000345865 LUC7L2Q9Y383 392 aaKnown RBP17.27■□□□□ 0.36
UPF3B-202ENST00000345865 C10orf71Q711Q0 1435 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 SCN9AQ15858 1988 aa17.27■□□□□ 0.36
UPF3B-202ENST00000345865 NDUFA10O95299 355 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 MMP10P09238 476 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 ALDH1B1P30837 517 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 DNM2P50570 870 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 TCP10Q12799 353 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 CCDC96Q2M329 555 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 TEX35Q5T0J7 233 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 NOC3LQ8WTT2 800 aaKnown RBP17.27■□□□□ 0.35
UPF3B-202ENST00000345865 LARP4BQ92615 738 aaKnown RBP17.27■□□□□ 0.35
UPF3B-202ENST00000345865 ZSWIM4Q9H7M6 989 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 TRIM10Q9UDY6 481 aa17.27■□□□□ 0.35
UPF3B-202ENST00000345865 EPN1Q9Y6I3 576 aaPredicted RBP17.27■□□□□ 0.35
UPF3B-202ENST00000345865 BICDL2A1A5D9 508 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 DDTLA6NHG4 134 aaPredicted RBP17.26■□□□□ 0.35
UPF3B-202ENST00000345865 ZBTB5O15062 677 aa17.26■□□□□ 0.35
UPF3B-202ENST00000345865 PDIA5Q14554 519 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms