RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TBCKQ8TEA7 893 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 CHURC1Q8WUH1 139 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 BBXQ8WY36 941 aaPredicted RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 ERCC4Q92889 916 aaPredicted RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 EPSTI1Q96J88 318 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 AMNQ9BXJ7 453 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 VCPKMTQ9H867 229 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 PCDHA1Q9Y5I3 950 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 CCNT1O60563 726 aaKnown RBP14.47□□□□□ -0.09
CLK3-201ENST00000345005 CTNND1O60716 968 aaKnown RBP14.47□□□□□ -0.09
CLK3-201ENST00000345005 PLA2G6O60733 806 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 CLK2P49760 499 aaKnown RBP14.47□□□□□ -0.09
CLK3-201ENST00000345005 MDM2Q00987 491 aaPredicted RBP14.47□□□□□ -0.09
CLK3-201ENST00000345005 LETM2Q2VYF4 491 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 DCAF15Q66K64 600 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 MCTP2Q6DN12 878 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 PDILTQ8N807 584 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 TMEM260Q9NX78 707 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 SERTAD1Q9UHV2 236 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 DOCK1Q14185 1865 aa14.47□□□□□ -0.09
CLK3-201ENST00000345005 DCAF8L1A6NGE4 600 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 ACTN4O43707 911 aaKnown RBP14.46□□□□□ -0.09
CLK3-201ENST00000345005 SLU7O95391 586 aaKnown RBP14.46□□□□□ -0.09
CLK3-201ENST00000345005 SLFN14P0C7P3 912 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 TXLNAP40222 546 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 SLC20A2Q08357 652 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 PNOCQ13519 176 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 IL17AQ16552 155 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 SPICE1Q8N0Z3 855 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 IPO4Q8TEX9 1081 aaKnown RBP14.46□□□□□ -0.09
CLK3-201ENST00000345005 SMCHD1A6NHR9 2005 aa14.46□□□□□ -0.09
CLK3-201ENST00000345005 SPDYE4A6NLX3 237 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 POSTNQ15063 836 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 FAM83BQ5T0W9 1011 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 C11orf57Q6ZUT1 292 aaPredicted RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 FAM160B2Q86V87 743 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 CCAR2Q8N163 923 aaKnown RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 IQUBQ8NA54 791 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 NAP1L4Q99733 375 aaKnown RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 TMEM60Q9H2L4 133 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 ZHX1Q9UKY1 873 aaPredicted RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 PRR12Q9ULL5 1215 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 SCAF8Q9UPN6 1271 aaKnown RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 ASTN2O75129 1339 aaPredicted RBP14.45□□□□□ -0.1
CLK3-201ENST00000345005 CCDC66A2RUB6 948 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 OR52Z1P0C646 297 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 YBX3P16989 372 aaKnown RBP eCLIP14.45□□□□□ -0.12e-6■■■□□ 18.1
CLK3-201ENST00000345005 YY1P25490 414 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 KIAA1755Q5JYT7 1200 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 TEX2Q8IWB9 1127 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 DHX58Q96C10 678 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 FEM1BQ9UK73 627 aa14.45□□□□□ -0.1
CLK3-201ENST00000345005 TPM1P09493 284 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 GPR162Q16538 588 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 UBE2SQ16763 222 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 CCDC144BQ3MJ40 725 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 NBPF12Q5TAG4 269 aaPredicted RBP14.44□□□□□ -0.1
CLK3-201ENST00000345005 ANGEL2Q5VTE6 544 aaKnown RBP14.44□□□□□ -0.1
CLK3-201ENST00000345005 AK8Q96MA6 479 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 ZNF341Q9BYN7 854 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 PCDHA5Q9Y5H7 936 aa14.44□□□□□ -0.1
CLK3-201ENST00000345005 A0A087X0B3 334 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 BIN1O00499 593 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 SMC2O95347 1197 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 AP3B2Q13367 1082 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 NT5DC1Q5TFE4 455 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 PPP4R3AQ6IN85 833 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 ZNF771Q7L3S4 317 aaPredicted RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 DHX40Q8IX18 779 aaKnown RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 SMARCE1Q969G3 411 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 SRRTQ9BXP5 876 aaKnown RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 PPP2R3BQ9Y5P8 575 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 FOSP01100 380 aaPredicted RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 GCFC2P16383 781 aaKnown RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 SNAP25P60880 206 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 CCZ1BP86790 482 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 CCZ1P86791 482 aaPredicted RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 BMS1Q14692 1282 aaKnown RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 ZYXQ15942 572 aaKnown RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 DPCR1Q3MIW9 517 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 SH3RF1Q7Z6J0 888 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 TRPM4Q8TD43 1214 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 ZNF592Q92610 1267 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 LPAR1Q92633 364 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 CCSER1Q9C0I3 900 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 KIAA1683Q9H0B3 1180 aa14.43□□□□□ -0.1
CLK3-201ENST00000345005 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.43□□□□□ -0.1
CLK3-201ENST00000345005 A0A087WWV3 80 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 FOXN1O15353 648 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 UBA7P41226 1012 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 EPS15P42566 896 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 SARSP49591 514 aaKnown RBP14.42□□□□□ -0.1
CLK3-201ENST00000345005 USP11P51784 963 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 CALCRLQ16602 461 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 TRIML1Q8N9V2 468 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 PAGE5Q96GU1 130 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 FAM53CQ9NYF3 392 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 RNF181Q9P0P0 153 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 ZNF112Q9UJU3 913 aa14.42□□□□□ -0.1
CLK3-201ENST00000345005 USP17L15C9J2P7 530 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms