RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 SH3GL2Q99962 352 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 SH3BP1Q9Y3L3 701 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 GLI3P10071 1580 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 IL6STP40189 918 aaPredicted RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 MAP2K1Q02750 393 aaPredicted RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 MEA1Q16626 185 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 EMBQ6PCB8 327 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 MICALCLQ6ZW33 695 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 CCDC43Q96MW1 224 aaKnown RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 OSBPL9Q96SU4 736 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 ZSCAN10Q96SZ4 725 aaPredicted RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 THAP9Q9H5L6 903 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 PDS5AQ29RF7 1337 aaKnown RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 ATRNO75882 1429 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 NCK2O43639 380 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 ZPR1O75312 459 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 SRGNP10124 158 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 GUCY1A3Q02108 690 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 IL17AQ16552 155 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 CCDC178Q5BJE1 867 aa15.25■□□□□ 0.03
SYNE3-201ENST00000334258 FAM207AQ9NSI2 230 aaPredicted RBP15.25■□□□□ 0.03
SYNE3-201ENST00000334258 PP2D1A8MPX8 630 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 GUCY2FP51841 1108 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 TRIM28Q13263 835 aaKnown RBP15.24■□□□□ 0.03
SYNE3-201ENST00000334258 ZIM3Q96PE6 472 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 PLA2G12BQ9BX93 195 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 CYP2D7A0A087X1C5 515 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 ESYT3A0FGR9 886 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 A6NNZ2 444 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 MEFVO15553 781 aaPredicted RBP15.24■□□□□ 0.03
SYNE3-201ENST00000334258 TCP1P17987 556 aaKnown RBP15.24■□□□□ 0.03
SYNE3-201ENST00000334258 RCAN1P53805 252 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 TUBB8Q3ZCM7 444 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 MMRN2Q9H8L6 949 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 HYOU1Q9Y4L1 999 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 PCDHA13Q9Y5I0 950 aa15.24■□□□□ 0.03
SYNE3-201ENST00000334258 BCAMP50895 628 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 VGLL2Q8N8G2 317 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 CCDC47Q96A33 483 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 CALR3Q96L12 384 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 CNOT6LQ96LI5 555 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 ERCC3P19447 782 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 BIRC2Q13490 618 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 SEC23AQ15436 765 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 DTHD1Q6ZMT9 781 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 RETREG2Q8NC44 543 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 GIMAP7Q8NHV1 300 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 RBM28Q9NW13 759 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 NFU1Q9UMS0 254 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 RNASE9P60153 205 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 ERFEQ4G0M1 354 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 MAATS1Q7Z4T9 603 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 RNPC3Q96LT9 517 aaKnown RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 DISC1Q9NRI5 854 aa15.23■□□□□ 0.03
SYNE3-201ENST00000334258 ZBTB12Q9Y330 459 aaPredicted RBP15.23■□□□□ 0.03
SYNE3-201ENST00000334258 ITGB4P16144 1822 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 ZNF263O14978 683 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 BUB1O43683 1085 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 HPDP32754 393 aaPredicted RBP15.22■□□□□ 0.03
SYNE3-201ENST00000334258 LSP1P33241 339 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 LONP1P36776 959 aaKnown RBP15.22■□□□□ 0.03
SYNE3-201ENST00000334258 MAGEA1P43355 309 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 SEC24CP53992 1094 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 GUCY2DQ02846 1103 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 IFT88Q13099 833 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 ZNF662Q6ZS27 426 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 IFT20Q8IY31 132 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 RASGRP4Q8TDF6 673 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 AFF2P51816 1311 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 NID2Q14112 1375 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 CCDC189A1A4V9 331 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 CAMTA2O94983 1202 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 CDR1P51861 262 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 APBA1Q02410 837 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 LRCH2Q5VUJ6 765 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 EPB41L5Q9HCM4 733 aa15.22■□□□□ 0.03
SYNE3-201ENST00000334258 RBM12Q9NTZ6 932 aaKnown RBP15.22■□□□□ 0.03
SYNE3-201ENST00000334258 CCNL1Q9UK58 526 aaPredicted RBP15.22■□□□□ 0.03
SYNE3-201ENST00000334258 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.22■□□□□ 0.03
SYNE3-201ENST00000334258 EIF4A3P38919 411 aaKnown RBP15.21■□□□□ 0.03
SYNE3-201ENST00000334258 KIF11P52732 1056 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 PDE4DQ08499 809 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 FUT2Q10981 343 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 HAUS3Q68CZ6 603 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 FAM114A1Q8IWE2 563 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 PRPF38AQ8NAV1 312 aaKnown RBP15.21■□□□□ 0.03
SYNE3-201ENST00000334258 MS4A14Q96JA4 679 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 MTA3Q9BTC8 594 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 SCG2P13521 617 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 VEGFAP15692 232 aaPredicted RBP15.21■□□□□ 0.03
SYNE3-201ENST00000334258 CARSP49589 748 aaKnown RBP15.21■□□□□ 0.03
SYNE3-201ENST00000334258 SKOR1P84550 965 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 TBC1D9BQ66K14 1250 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 TTI2Q6NXR4 508 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 SH2D4AQ9H788 454 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 MTMR7Q9Y216 660 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 BCL9LQ86UU0 1499 aa15.21■□□□□ 0.03
SYNE3-201ENST00000334258 E7EVH7 732 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 TRAPPC10P48553 1259 aa15.21■□□□□ 0.02
SYNE3-201ENST00000334258 ASIC1P78348 528 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms