RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 HMGB1P09429 215 aaKnown RBP18.37■□□□□ 0.53
CLN3-201ENST00000333496 KIF5BP33176 963 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 CMTR1Q8N1G2 835 aaKnown RBP18.37■□□□□ 0.53
CLN3-201ENST00000333496 SRBD1Q8N5C6 995 aaKnown RBP18.37■□□□□ 0.53
CLN3-201ENST00000333496 ARRDC4Q8NCT1 418 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 SPZ1Q9BXG8 430 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 XPNPEP3Q9NQH7 507 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 COL20A1Q9P218 1284 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 BRPF3Q9ULD4 1205 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 PCDHA1Q9Y5I3 950 aa18.37■□□□□ 0.53
CLN3-201ENST00000333496 PNMA6FA0A0J9YX94 578 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 ADAMTS4O75173 837 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 CALM1P0DP23 149 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 CALM2P0DP24 149 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 CALM3P0DP25 149 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 SMARCA1P28370 1054 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 TAPT1Q6NXT6 567 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 APOA5Q6Q788 366 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 EEPD1Q7L9B9 569 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 FANCBQ8NB91 859 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 MAF1Q9H063 256 aa18.36■□□□□ 0.53
CLN3-201ENST00000333496 LOC102724159A0A0B4J2E5 919 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 IRX5P78411 483 aaPredicted RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 PWP2Q15269 919 aaKnown RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 MICU3Q86XE3 530 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 FBXO16Q8IX29 292 aaPredicted RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 DNERQ8NFT8 737 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 SYTL5Q8TDW5 730 aaPredicted RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 PIBF1Q8WXW3 757 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 SENP6Q9GZR1 1112 aaPredicted RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 PDGFCQ9NRA1 345 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 RBM19Q9Y4C8 960 aaKnown RBP18.35■□□□□ 0.53
CLN3-201ENST00000333496 SYNRGQ9UMZ2 1314 aa18.35■□□□□ 0.53
CLN3-201ENST00000333496 DUSP11O75319 330 aaKnown RBP18.34■□□□□ 0.53
CLN3-201ENST00000333496 MYCNP04198 464 aaPredicted RBP18.34■□□□□ 0.53
CLN3-201ENST00000333496 EDNRBP24530 442 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 ADCYAP1R1P41586 468 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 GHRHRQ02643 423 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 MCF2L2Q86YR7 1114 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 TAAR1Q96RJ0 339 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 CEP290O15078 2479 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 CFBP00751 764 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 GNAQP50148 359 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 HSD17B4P51659 736 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 LRRC26Q2I0M4 334 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 TMEM63BQ5T3F8 832 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 BLOC1S2Q6QNY1 142 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 Q6ZUG5 572 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 LZTS2Q9BRK4 669 aa18.34■□□□□ 0.53
CLN3-201ENST00000333496 MYADML2A6NDP7 307 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 KBTBD13C9JR72 458 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 H0YGN5 161 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 EVI5O60447 810 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 PTGS1P23219 599 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 RPS6KB1P23443 525 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 TMTC3Q6ZXV5 915 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 KLHDC9Q8NEP7 349 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 VTA1Q9NP79 307 aa18.33■□□□□ 0.52
CLN3-201ENST00000333496 GNEQ9Y223 722 aaKnown RBP18.33■□□□□ 0.52
CLN3-201ENST00000333496 KLF18A0A0U1RQI7 1052 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 CASTP20810 708 aaKnown RBP18.32■□□□□ 0.52
CLN3-201ENST00000333496 TNFAIP2Q03169 654 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 CCSAPQ6IQ19 270 aaPredicted RBP18.32■□□□□ 0.52
CLN3-201ENST00000333496 SYNE3Q6ZMZ3 975 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 RNF180Q86T96 592 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 FBXL16Q8N461 479 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 CCDC82Q8N4S0 544 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 RRP36Q96EU6 259 aaKnown RBP18.32■□□□□ 0.52
CLN3-201ENST00000333496 AGXT2Q9BYV1 514 aa18.32■□□□□ 0.52
CLN3-201ENST00000333496 FAM217BQ9NTX9 383 aaPredicted RBP18.32■□□□□ 0.52
CLN3-201ENST00000333496 MYH7BA7E2Y1 1941 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 CTAGE5O15320 804 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 ZBTB43O43298 467 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 SMPD1P17405 629 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 GJA9P57773 515 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 APOBRQ0VD83 1088 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 IQSEC1Q6DN90 963 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 UPF3AQ9H1J1 476 aaKnown RBP18.31■□□□□ 0.52
CLN3-201ENST00000333496 MAP3K20Q9NYL2 800 aaKnown RBP18.31■□□□□ 0.52
CLN3-201ENST00000333496 hCG_1642624A0A1W2PR95 340 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 RBM47A0AV96 593 aaKnown RBP18.31■□□□□ 0.52
CLN3-201ENST00000333496 PSMA5P28066 241 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 CDC27P30260 824 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 HOXA13P31271 388 aaPredicted RBP18.31■□□□□ 0.52
CLN3-201ENST00000333496 ATN1P54259 1190 aaPredicted RBP18.31■□□□□ 0.52
CLN3-201ENST00000333496 NKX3-2P78367 333 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 PDE4DQ08499 809 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 FUT2Q10981 343 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 TRAF1Q13077 416 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 BRF1Q92994 677 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 FERMT2Q96AC1 680 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 RMDN3Q96TC7 470 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 ZSWIM6Q9HCJ5 1215 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 PHF24Q9UPV7 400 aa18.31■□□□□ 0.52
CLN3-201ENST00000333496 C6orf222P0C671 652 aaPredicted RBP18.3■□□□□ 0.52
CLN3-201ENST00000333496 CST5P28325 142 aaPredicted RBP18.3■□□□□ 0.52
CLN3-201ENST00000333496 RTN1Q16799 776 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 SLC39A5Q6ZMH5 540 aa18.3■□□□□ 0.52
CLN3-201ENST00000333496 RUFY3Q7L099 469 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms