RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 MAN1B1Q9UKM7 699 aa20.86■□□□□ 0.93
USP39-201ENST00000323701 VCAM1P19320 739 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 LMOD1P29536 600 aaPredicted RBP20.85■□□□□ 0.93
USP39-201ENST00000323701 CEP57L1Q8IYX8 460 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 AOPEPQ8N6M6 819 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 SPATA20Q8TB22 786 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 HAS1Q92839 578 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 ZNF536O15090 1300 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 CALCRLQ16602 461 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 NT5DC1Q5TFE4 455 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 PPP4R3AQ6IN85 833 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 FAM160B2Q86V87 743 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 AGBL1Q96MI9 1066 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 MMTAG2Q9BU76 263 aaKnown RBP20.85■□□□□ 0.93
USP39-201ENST00000323701 ZHX2Q9Y6X8 837 aa20.85■□□□□ 0.93
USP39-201ENST00000323701 WDR46O15213 610 aaKnown RBP20.84■□□□□ 0.93
USP39-201ENST00000323701 ZRSR1Q15695 479 aaKnown RBP20.84■□□□□ 0.93
USP39-201ENST00000323701 UBE2Q2Q8WVN8 375 aa20.84■□□□□ 0.93
USP39-201ENST00000323701 DDX25Q9UHL0 483 aaKnown RBP20.84■□□□□ 0.93
USP39-201ENST00000323701 USP2O75604 605 aaPredicted RBP20.83■□□□□ 0.93
USP39-201ENST00000323701 CAVIN2O95810 425 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 LDHDQ86WU2 507 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 IGSF22Q8N9C0 903 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 IQUBQ8NA54 791 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 LPAR1Q92633 364 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 GLT8D2Q9H1C3 349 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 BLZF1Q9H2G9 400 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 DISC1Q9NRI5 854 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 GINM1Q9NU53 330 aa20.83■□□□□ 0.93
USP39-201ENST00000323701 BACE1P56817 501 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 DPYDQ12882 1025 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 WNK4Q96J92 1243 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 TANGO6Q9C0B7 1094 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 PPP2R3BQ9Y5P8 575 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 PITPNM2Q9BZ72 1349 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 PHIPQ8WWQ0 1821 aa20.83■□□□□ 0.92
USP39-201ENST00000323701 POTEMA6NI47 508 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 CFBP00751 764 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 ARHGAP4P98171 946 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 ORC2Q13416 577 aaPredicted RBP20.82■□□□□ 0.92
USP39-201ENST00000323701 ZNF280CQ8ND82 737 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 SLF1Q9BQI6 1058 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 WDR18Q9BV38 432 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 CCSER1Q9C0I3 900 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 UBA7P41226 1012 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 AP3B2Q13367 1082 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 NCAPHQ15003 741 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 KANK3Q6NY19 840 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 FCHSD1Q86WN1 690 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.82■□□□□ 0.923e-6■□□□□ 9.8
USP39-201ENST00000323701 SMARCE1Q969G3 411 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 RPAP3Q9H6T3 665 aaPredicted RBP20.82■□□□□ 0.92
USP39-201ENST00000323701 PICK1Q9NRD5 415 aa20.82■□□□□ 0.92
USP39-201ENST00000323701 HMGCS2P54868 508 aa20.81■□□□□ 0.92
USP39-201ENST00000323701 CUL4BQ13620 913 aa20.81■□□□□ 0.92
USP39-201ENST00000323701 MORC3Q14149 939 aa20.81■□□□□ 0.92
USP39-201ENST00000323701 PRPF38AQ8NAV1 312 aaKnown RBP20.81■□□□□ 0.92
USP39-201ENST00000323701 CYP2W1Q8TAV3 490 aa20.81■□□□□ 0.92
USP39-201ENST00000323701 NUDT12Q9BQG2 462 aa20.81■□□□□ 0.92
USP39-201ENST00000323701 HOOK1Q9UJC3 728 aaKnown RBP20.81■□□□□ 0.92
USP39-201ENST00000323701 FAM86B1E9PN63 330 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 PIK3CDO00329 1044 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 FLOT1O75955 427 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 FAM86B2P0C5J1 330 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 STAT6P42226 847 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 GPR162Q16538 588 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.8■□□□□ 0.92
USP39-201ENST00000323701 CABP7Q86V35 215 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 CNKSR2Q8WXI2 1034 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 HOOK2Q96ED9 719 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 TTC12Q9H892 705 aaPredicted RBP20.8■□□□□ 0.92
USP39-201ENST00000323701 PLCG1P19174 1290 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 USP11P51784 963 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 SUPT20HL1Q3ZLR7 823 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 LENG9Q96B70 501 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 DCPSQ96C86 337 aaKnown RBP20.8■□□□□ 0.92
USP39-201ENST00000323701 AK8Q96MA6 479 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 HSD3B7Q9H2F3 369 aa20.8■□□□□ 0.92
USP39-201ENST00000323701 CYP3A7-CYP3A51PA0A087WV96 503 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 SPDYE3A6NKU9 549 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 CYP3A7P24462 503 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 SREBF1P36956 1147 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 FXR2P51116 673 aaKnown RBP eCLIP20.79■□□□□ 0.92
USP39-201ENST00000323701 CPXCR1Q8N123 301 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 L3MBTL3Q96JM7 780 aaPredicted RBP20.79■□□□□ 0.92
USP39-201ENST00000323701 MBOAT7Q96N66 472 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 BPIFA3Q9BQP9 254 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 NAT10Q9H0A0 1025 aaKnown RBP20.79■□□□□ 0.92
USP39-201ENST00000323701 BECN2A8MW95 431 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 ICAM1P05362 532 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 TXLNAP40222 546 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 VGLL4Q14135 290 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 RRAGBQ5VZM2 374 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 KRT26Q7Z3Y9 468 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 MED15Q96RN5 788 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 SLC38A10Q9HBR0 1119 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 RAVER2Q9HCJ3 691 aaKnown RBP20.79■□□□□ 0.92
USP39-201ENST00000323701 KCNMB3Q9NPA1 279 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 LRWD1Q9UFC0 647 aa20.79■□□□□ 0.92
USP39-201ENST00000323701 CCPG1Q9ULG6 757 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms