RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 HOXA13P31271 388 aaPredicted RBP31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 NOM1Q5C9Z4 860 aaKnown RBP31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 IFNL1Q8IU54 200 aa31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 CHST13Q8NET6 341 aa31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 SCAND2PQ9GZW5 306 aaPredicted RBP31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 MAP3K20Q9NYL2 800 aaKnown RBP31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 FBXO40Q9UH90 709 aa31.32■■■□□ 2.6
CTDNEP1-201ENST00000318988 SLC25A27O95847 323 aa31.31■■■□□ 2.6
CTDNEP1-201ENST00000318988 CEBPZQ03701 1054 aaKnown RBP31.31■■■□□ 2.6
CTDNEP1-201ENST00000318988 POTEEQ6S8J3 1075 aa31.31■■■□□ 2.6
CTDNEP1-201ENST00000318988 CAPNS2Q96L46 248 aa31.31■■■□□ 2.6
CTDNEP1-201ENST00000318988 EHMT1Q9H9B1 1298 aa31.31■■■□□ 2.6
CTDNEP1-201ENST00000318988 IGF2BP3O00425 579 aaKnown RBP eCLIP31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 FIBPO43427 364 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 CNMDO75829 334 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 INF2Q27J81 1249 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 NSMFQ6X4W1 530 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 FCHSD1Q86WN1 690 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 NCAPG2Q86XI2 1143 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 USP28Q96RU2 1077 aa31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 COL11A1P12107 1806 aaPredicted RBP31.3■■■□□ 2.6
CTDNEP1-201ENST00000318988 ERVK-9P63128 1117 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 ERVK-24P63145 666 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 CCNA1P78396 465 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TAF1CQ15572 869 aaPredicted RBP31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 RNF207Q6ZRF8 634 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 GPRC5AQ8NFJ5 357 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TBCKQ8TEA7 893 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TBC1D5Q92609 795 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 PGBD1Q96JS3 809 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TXNRD2Q9NNW7 524 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 A0A0G2JMZ2 1700 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 PEX10O60683 326 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 HSD17B4P51659 736 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TTC38Q5R3I4 469 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 ANO1Q5XXA6 986 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 SPATA32Q96LK8 384 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 MOV10L1Q9BXT6 1211 aaKnown RBP31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 ANO3Q9BYT9 981 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 MAF1Q9H063 256 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 POLR3EQ9NVU0 708 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 CEP131Q9UPN4 1083 aa31.29■■■□□ 2.6
CTDNEP1-201ENST00000318988 TM4SF4P48230 202 aa31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 TOB1P50616 345 aaPredicted RBP31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 NEK8Q86SG6 692 aa31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 REM2Q8IYK8 340 aaPredicted RBP31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 ANKRD13CQ8N6S4 541 aa31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 RTEL1Q9NZ71 1219 aa31.28■■■□□ 2.6
CTDNEP1-201ENST00000318988 STK38Q15208 465 aa31.27■■■□□ 2.6
CTDNEP1-201ENST00000318988 CCAR1Q8IX12 1150 aaKnown RBP31.27■■■□□ 2.6
CTDNEP1-201ENST00000318988 GDPD2Q9HCC8 539 aa31.27■■■□□ 2.6
CTDNEP1-201ENST00000318988 CLIC4Q9Y696 253 aa31.27■■■□□ 2.6
CTDNEP1-201ENST00000318988 MCM4P33991 863 aa31.26■■■□□ 2.59
CTDNEP1-201ENST00000318988 GHRHRQ02643 423 aa31.26■■■□□ 2.59
CTDNEP1-201ENST00000318988 SF3A1Q15459 793 aaKnown RBP31.26■■■□□ 2.59
CTDNEP1-201ENST00000318988 FTOQ9C0B1 505 aaKnown RBP eCLIP31.26■■■□□ 2.59
CTDNEP1-201ENST00000318988 ERCC3P19447 782 aa31.25■■■□□ 2.59
CTDNEP1-201ENST00000318988 RPS6P62753 249 aaKnown RBP31.25■■■□□ 2.59
CTDNEP1-201ENST00000318988 MROH8Q9H579 483 aa31.25■■■□□ 2.59
CTDNEP1-201ENST00000318988 ZFYVE28Q9HCC9 887 aa31.25■■■□□ 2.59
CTDNEP1-201ENST00000318988 MORF4L1Q9UBU8 362 aa31.25■■■□□ 2.59
CTDNEP1-201ENST00000318988 YEATS4O95619 227 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 BMP15O95972 392 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 NBR1Q14596 966 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 LETM2Q2VYF4 491 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 Q3C1V9 767 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 WDR78Q5VTH9 848 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 ANKRD35Q8N283 1001 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 SHCBP1Q8NEM2 672 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 PCDHB6Q9Y5E3 794 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 SMCHD1A6NHR9 2005 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 DDX11L8A8MPP1 907 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 NASPP49321 788 aaPredicted RBP31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 BAATQ14032 418 aaPredicted RBP31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 SYTL5Q8TDW5 730 aaPredicted RBP31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 LEO1Q8WVC0 666 aaPredicted RBP31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 ZIC5Q96T25 663 aa31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 NAP1L4Q99733 375 aaKnown RBP31.24■■■□□ 2.59
CTDNEP1-201ENST00000318988 PFASO15067 1338 aa31.23■■■□□ 2.59
CTDNEP1-201ENST00000318988 AOC2O75106 756 aa31.23■■■□□ 2.59
CTDNEP1-201ENST00000318988 ALDH1A1P00352 501 aa31.23■■■□□ 2.59
CTDNEP1-201ENST00000318988 ZNF174Q15697 407 aa31.23■■■□□ 2.59
CTDNEP1-201ENST00000318988 MYH15Q9Y2K3 1946 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 CCNT1O60563 726 aaKnown RBP31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 MCM7P33993 719 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 FAM110CQ1W6H9 321 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 SLC30A10Q6XR72 485 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 KCNG4Q8TDN1 519 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 A1CFQ9NQ94 594 aaKnown RBP31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 RCOR1Q9UKL0 485 aa31.22■■■□□ 2.59
CTDNEP1-201ENST00000318988 PRPF40AO75400 957 aaKnown RBP31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 PTMSP20962 102 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 SREBF1P36956 1147 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 USP11P51784 963 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 ARHGAP4P98171 946 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 NFKBIBQ15653 356 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 LINC00301Q8NCQ3 95 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 EIF4ENIF1Q9NRA8 985 aaKnown RBP31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 CYP39A1Q9NYL5 469 aa31.21■■■□□ 2.59
CTDNEP1-201ENST00000318988 SPTLC2O15270 562 aa31.2■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms