RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 NUTM2FA1L443 756 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 PTPDC1A2A3K4 754 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ECEL1O95672 775 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 MCM4P33991 863 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 LRRC36Q1X8D7 754 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 THOC7Q6I9Y2 204 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CCDC81Q6ZN84 652 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 KLHL7Q8IXQ5 586 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 INPP5DQ92835 1189 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CUL5Q93034 780 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 DEPDC7Q96QD5 511 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 RRN3Q9NYV6 651 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 FAM8A1Q9UBU6 413 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 RRAGBQ5VZM2 374 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 C8orf74Q6P047 294 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 BZW1Q7L1Q6 419 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 GET4Q7L5D6 327 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 THAP11Q96EK4 314 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 C19orf60Q96EN9 201 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 AGBL1Q96MI9 1066 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 EPAS1Q99814 870 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 EURLQ9NYK6 297 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 PKD2L1Q9P0L9 805 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 SERPINB13Q9UIV8 391 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 SPARCP09486 303 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 CAPZA2P47755 286 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 MAPRE1Q15691 268 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 ATG16L1Q676U5 607 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 RFX6Q8HWS3 928 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 CALML4Q96GE6 196 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 IFIH1Q9BYX4 1025 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TRIM45Q9H8W5 580 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TTC21AQ8NDW8 1320 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 PDE1BQ01064 536 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 PLEKHA7Q6IQ23 1121 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TMTC3Q6ZXV5 915 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 USP51Q70EK9 711 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 C1orf115Q9H7X2 142 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 H2AFY2Q9P0M6 372 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 MCM8Q9UJA3 840 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 PPP1R37O75864 691 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 PYGMP11217 842 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 CENPAP49450 140 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 SLC8A3P57103 927 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 APOBRQ0VD83 1088 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 UNKQ9C0B0 810 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 CNNM1Q9NRU3 951 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TBC1D23Q9NUY8 699 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 ATAD3AQ9NVI7 634 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TRIM3O75382 744 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 HSPA1AP0DMV8 641 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 HSPA1BP0DMV9 641 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 ZNF18P17022 549 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 MAGEA6P43360 314 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 ARPP19P56211 112 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 OLR1P78380 273 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 NR5A1Q13285 461 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 CFAP221Q4G0U5 840 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 C6orf118Q5T5N4 469 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TMEM154Q6P9G4 183 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 TTC29Q8NA56 475 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 ING3Q9NXR8 418 aa8.28□□□□□ -1.08
LIMCH1-201ENST00000313860 KRT86O43790 486 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 SPOPO43791 374 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 IDH3BO43837 385 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 TARSP26639 723 aaKnown RBP8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 MAP4P27816 1152 aaKnown RBP8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 FLT3P36888 993 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 CEBPGP53567 150 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 MLECQ14165 292 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 ADCK5Q3MIX3 580 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 CHAMP1Q96JM3 812 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 OLFML3Q9NRN5 406 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 CUEDC1Q9NWM3 386 aaPredicted RBP8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 USTQ9Y2C2 406 aa8.27□□□□□ -1.08
LIMCH1-201ENST00000313860 ARHGAP10A1A4S6 786 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ACTN4O43707 911 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 BRD1O95696 1058 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 PRLP01236 227 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 COG2Q14746 738 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 TRIP4Q15650 581 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ERICH5Q6P6B1 374 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SLC30A9Q6PML9 568 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 TAB3Q8N5C8 712 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 E2F7Q96AV8 911 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 CCDC28BQ9BUN5 200 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SNX25Q9H3E2 840 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 C2orf74A8MZ97 194 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 COBLO75128 1261 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 GUCA1CO95843 209 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 ESRRAP11474 423 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 SMTNP53814 917 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 DEFA1P59665 94 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 DEFA3P59666 94 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 AMPD3Q01432 767 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 STKLD1Q8NE28 680 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 FAM81AQ8TBF8 368 aa8.27□□□□□ -1.09
LIMCH1-201ENST00000313860 DIS3LQ8TF46 1054 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms