RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NDEL1Q9GZM8 345 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 TIMMDC1Q9NPL8 285 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 SERPINA10Q9UK55 444 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 CROCC2H7BZ55 1655 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 LAMC1P11047 1609 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 HOXB6P17509 224 aaKnown RBP5.26□□□□□ -1.57
CSMD3-201ENST00000297405 AASDHQ4L235 1098 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-201ENST00000297405 SUGP1Q8IWZ8 645 aaKnown RBP5.26□□□□□ -1.57
CSMD3-201ENST00000297405 CIDEBQ9UHD4 219 aa5.26□□□□□ -1.57
CSMD3-201ENST00000297405 CDV3Q9UKY7 258 aaKnown RBP5.26□□□□□ -1.57
CSMD3-201ENST00000297405 SBNO1A3KN83 1393 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SGSM2O43147 1006 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 BRD1O95696 1058 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CWF19L2Q2TBE0 894 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ASZ1Q8WWH4 475 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 MAGED4Q96JG8 741 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SMARCAL1Q9NZC9 954 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ADAMTS8Q9UP79 889 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TNNQ9UQP3 1299 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SERPINB8P50452 374 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 HSP90AA4PQ58FG1 418 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SRLQ86TD4 932 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 KLHL23Q8NBE8 558 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 THAP11Q96EK4 314 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TINF2Q9BSI4 451 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TRAIPQ9BWF2 469 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PDE11AQ9HCR9 933 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PKD2L2Q9NZM6 624 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 STX7O15400 261 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 MYCNP04198 464 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PPP2R1AP30153 589 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ECHDC1Q9NTX5 307 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 HEATR5BQ9P2D3 2071 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 RPRD2Q5VT52 1461 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CUTAO60888 179 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 KRT72Q14CN4 511 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PLEKHO1Q53GL0 409 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CDR2LQ86X02 465 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PSMA8Q8TAA3 256 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CUEDC2Q9H467 287 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 AFDNP55196 1824 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SPOPO43791 374 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 HABP4Q5JVS0 413 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 HAUS3Q68CZ6 603 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TRAF7Q6Q0C0 670 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 PAPOLBQ9NRJ5 636 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SPTLC3Q9NUV7 552 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SMIM23A6NLE4 172 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ARMCX6Q7L4S7 300 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TRIM69Q86WT6 500 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 STX12Q86Y82 276 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 LRRC49Q8IUZ0 686 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 DDHD1Q8NEL9 900 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 LTV1Q96GA3 475 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TMX1Q9H3N1 280 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 UVRAGQ9P2Y5 699 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 AGTPBP1Q9UPW5 1226 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SYNGAP1Q96PV0 1343 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SYCP2Q9BX26 1530 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 KIAA2026Q5HYC2 2103 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 GYG2O15488 501 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 DKC1O60832 514 aaKnown RBP eCLIP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 DTHD1Q6ZMT9 781 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 YIPF3Q9GZM5 350 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CLSTN2Q9H4D0 955 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 EPRSP07814 1512 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SCRN3Q0VDG4 424 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 RSL24D1Q9UHA3 163 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CALUO43852 315 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 EEF1GP26641 437 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ADKP55263 362 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 GNPTABQ3T906 1256 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 RMDN1Q96DB5 314 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 SHANK1Q9Y566 2161 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 CDAN1Q8IWY9 1227 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 AGGF1Q8N302 714 aaeCLIP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ESR2Q92731 530 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ALKBH8Q96BT7 664 aaKnown RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 APOL4Q9BPW4 351 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 C8orf4Q9NR00 106 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 TMOD2Q9NZR1 351 aa5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ZNF215Q9UL58 517 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-201ENST00000297405 ATP5BP06576 529 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 SPARCL1Q14515 664 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 TBC1D8O95759 1140 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 BAG2O95816 211 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 SNX1Q13596 522 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 MAPRE2Q15555 327 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 SHQ1Q6PI26 577 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 BZW1Q7L1Q6 419 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 STAMQ92783 540 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 CMTM5Q96DZ9 223 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 SMARCAD1Q9H4L7 1026 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 C6orf50Q9HD87 102 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 PUF60Q9UHX1 559 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 LIN7AO14910 233 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 TLR3O15455 904 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 KRT10P13645 584 aa5.24□□□□□ -1.57
CSMD3-201ENST00000297405 RARSP54136 660 aaKnown RBP5.24□□□□□ -1.57
CSMD3-201ENST00000297405 FLIIQ13045 1269 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms