RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 DHX16O60231 1041 aaKnown RBP16.46■□□□□ 0.23
TPM1-202ENST00000288398 CSF2RAP15509 400 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 DNAJB2P25686 324 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 CPT1AP50416 773 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 IMMTQ16891 758 aaKnown RBP16.46■□□□□ 0.23
TPM1-202ENST00000288398 TAPT1Q6NXT6 567 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 TBC1D10CQ8IV04 446 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.46■□□□□ 0.238e-7■■■□□ 15.2
TPM1-202ENST00000288398 ZKSCAN3Q9BRR0 538 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 WDR11Q9BZH6 1224 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 POLR3EQ9NVU0 708 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 CTNNA3Q9UI47 895 aa16.46■□□□□ 0.23
TPM1-202ENST00000288398 DDX49Q9Y6V7 483 aaKnown RBP16.46■□□□□ 0.23
TPM1-202ENST00000288398 WDR19Q8NEZ3 1342 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 CTAGE5O15320 804 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 NUCB1Q02818 461 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 PPP2R5BQ15173 497 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 USH1GQ495M9 461 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 DUSP28Q4G0W2 176 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 SLC30A10Q6XR72 485 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 DGKHQ86XP1 1220 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 MORC4Q8TE76 937 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 TIFAQ96CG3 184 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 PURBQ96QR8 312 aaKnown RBP16.45■□□□□ 0.22
TPM1-202ENST00000288398 TTYH1Q9H313 450 aaPredicted RBP16.45■□□□□ 0.22
TPM1-202ENST00000288398 LAMA2P24043 3122 aaKnown RBP16.45■□□□□ 0.22
TPM1-202ENST00000288398 ASTN1O14525 1302 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 NEDD4P46934 1319 aa16.45■□□□□ 0.22
TPM1-202ENST00000288398 KDM4AO75164 1064 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 MYL3P08590 195 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 SUPT20HL2P0C7V6 817 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 GOLGA8HP0CJ92 632 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 ACRP10323 421 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 CYP2C18P33260 490 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 PLEKHM2Q8IWE5 1019 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 PNMA1Q8ND90 353 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 DNERQ8NFT8 737 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 OR6J1Q8NGC5 347 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 UBAC1Q9BSL1 405 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 OSBPL3Q9H4L5 887 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 IL23AQ9NPF7 189 aa16.44■□□□□ 0.22
TPM1-202ENST00000288398 NKRFO15226 690 aaKnown RBP eCLIP16.43■□□□□ 0.221e-6■■□□□ 14
TPM1-202ENST00000288398 CD4P01730 458 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 FGBP02675 491 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 PSMC6P62333 389 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 RPS6P62753 249 aaKnown RBP16.43■□□□□ 0.22
TPM1-202ENST00000288398 TMEM240Q5SV17 173 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 ZNF365Q70YC5 407 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 RPUSD2Q8IZ73 545 aaKnown RBP16.43■□□□□ 0.22
TPM1-202ENST00000288398 SLC43A3Q8NBI5 491 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 SCFD2Q8WU76 684 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 KRT23Q9C075 422 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 CNNM2Q9H8M5 875 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 MSRAQ9UJ68 235 aa16.43■□□□□ 0.22
TPM1-202ENST00000288398 LRRC37A2A6NM11 1700 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 SNHG28P0DPA3 235 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 CCL23P55773 120 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 RAB30Q15771 203 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 CDC37Q16543 378 aaPredicted RBP16.42■□□□□ 0.22
TPM1-202ENST00000288398 ASPRV1Q53RT3 343 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 FAM47CQ5HY64 1035 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 MCF2L2Q86YR7 1114 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 CLEC4DQ8WXI8 215 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 ZSCAN10Q96SZ4 725 aaPredicted RBP16.42■□□□□ 0.22
TPM1-202ENST00000288398 GAS2L1Q99501 681 aaPredicted RBP16.42■□□□□ 0.22
TPM1-202ENST00000288398 MTG1Q9BT17 334 aaPredicted RBP16.42■□□□□ 0.22
TPM1-202ENST00000288398 DSCC1Q9BVC3 393 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 UBA5Q9GZZ9 404 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 TRPV6Q9H1D0 765 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 ZNF576Q9H609 170 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 ABCB11O95342 1321 aa16.42■□□□□ 0.22
TPM1-202ENST00000288398 B4E1Z4 1266 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 B4GALT4O60513 344 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 KPNA6O60684 536 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 IGHDP01880 384 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 PARP1P09874 1014 aaKnown RBP16.41■□□□□ 0.22
TPM1-202ENST00000288398 PTGS1P23219 599 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 TTLL4Q14679 1199 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 EXOC6Q8TAG9 804 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 NOD1Q9Y239 953 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 A0A0C4DFX4 3053 aa16.41■□□□□ 0.22
TPM1-202ENST00000288398 ZBBXA8MT70 800 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 TXNP10599 105 aaKnown RBP16.4■□□□□ 0.22
TPM1-202ENST00000288398 CHMP4BP1P59074 171 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 TRDNQ13061 729 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 RGS22Q8NE09 1264 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 NOC4LQ9BVI4 516 aaKnown RBP16.4■□□□□ 0.22
TPM1-202ENST00000288398 MAF1Q9H063 256 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 ALDH8A1Q9H2A2 487 aaPredicted RBP16.4■□□□□ 0.22
TPM1-202ENST00000288398 TNKSO95271 1327 aa16.4■□□□□ 0.22
TPM1-202ENST00000288398 RBM47A0AV96 593 aaKnown RBP16.39■□□□□ 0.21
TPM1-202ENST00000288398 PURAQ00577 322 aaKnown RBP16.39■□□□□ 0.21
TPM1-202ENST00000288398 GRIN2CQ14957 1233 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 TMEM63BQ5T3F8 832 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 IFIT1BQ5T764 474 aaKnown RBP16.39■□□□□ 0.21
TPM1-202ENST00000288398 C16orf59Q7L2K0 433 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 OTOP2Q7RTS6 562 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 FBXO11Q86XK2 927 aa16.39■□□□□ 0.21
TPM1-202ENST00000288398 NSUN6Q8TEA1 469 aaKnown RBP16.39■□□□□ 0.21
TPM1-202ENST00000288398 HERVK_113Q902F9 699 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms