RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 SPECC1Q5M775 1068 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 MOXD1Q6UVY6 613 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 DTHD1Q6ZMT9 781 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CATSPERGQ6ZRH7 1159 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CCPG1Q9ULG6 757 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 ADAMTS5Q9UNA0 930 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CLEC11AQ9Y240 323 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 PTPRFP10586 1907 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CYP3A7-CYP3A51PA0A087WV96 503 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 SPDYE5A6NIY4 337 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 SPDYE3A6NKU9 549 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 GCOM1H8Y6P7 765 aaPredicted RBP16.01■□□□□ 0.15
SS18-201ENST00000269137 VWA5AO00534 786 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 POLR2MP0CAP2 368 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CCDC192P0DO97 292 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CYP3A7P24462 503 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 DSG3P32926 999 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 TTLL12Q14166 644 aaPredicted RBP16.01■□□□□ 0.15
SS18-201ENST00000269137 COG2Q14746 738 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 LDLRAD1Q5T700 205 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 SAMD1Q6SPF0 538 aaPredicted RBP16.01■□□□□ 0.15
SS18-201ENST00000269137 USP49Q70CQ1 688 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 CKAP2LQ8IYA6 745 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 AGBL1Q96MI9 1066 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 MTMR9Q96QG7 549 aa16.01■□□□□ 0.15
SS18-201ENST00000269137 P2RX7Q99572 595 aaKnown RBP16.01■□□□□ 0.15
SS18-201ENST00000269137 MYPNQ86TC9 1320 aa16■□□□□ 0.15
SS18-201ENST00000269137 CXCL11O14625 94 aa16■□□□□ 0.15
SS18-201ENST00000269137 POTEIP0CG38 1075 aa16■□□□□ 0.15
SS18-201ENST00000269137 POTEJP0CG39 1038 aa16■□□□□ 0.15
SS18-201ENST00000269137 SREBF1P36956 1147 aa16■□□□□ 0.15
SS18-201ENST00000269137 GHRHRQ02643 423 aa16■□□□□ 0.15
SS18-201ENST00000269137 SYMPKQ92797 1274 aaKnown RBP16■□□□□ 0.15
SS18-201ENST00000269137 EPSTI1Q96J88 318 aa16■□□□□ 0.15
SS18-201ENST00000269137 MBOAT7Q96N66 472 aa16■□□□□ 0.15
SS18-201ENST00000269137 ELP3Q9H9T3 547 aa16■□□□□ 0.15
SS18-201ENST00000269137 GRPEL1Q9HAV7 217 aa16■□□□□ 0.15
SS18-201ENST00000269137 TDP2O95551 362 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 OAZ1P54368 228 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 KRBA2Q6ZNG9 492 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 MOB2Q70IA6 237 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 SAMD3Q8N6K7 520 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 CNKSR2Q8WXI2 1034 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 ATG4CQ96DT6 458 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 CLMNQ96JQ2 1002 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 AK8Q96MA6 479 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 RRAGCQ9HB90 399 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 HOXC10Q9NYD6 342 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 KCNH4Q9UQ05 1017 aa15.99■□□□□ 0.15
SS18-201ENST00000269137 A0A0G2JLL6 359 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 POLR2DO15514 142 aaKnown RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 HOXA13P31271 388 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 ARHGAP4P98171 946 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 PPIL2Q13356 520 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CALCRLQ16602 461 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 LONRF3Q496Y0 759 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 MAP1SQ66K74 1059 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 PRRT2Q7Z6L0 340 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 POTEDQ86YR6 584 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 MCF2L2Q86YR7 1114 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 REPS2Q8NFH8 660 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CLEC4DQ8WXI8 215 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 PYM1Q9BRP8 204 aaKnown RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 RBSNQ9H1K0 784 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 MAP3K20Q9NYL2 800 aaKnown RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 DDX25Q9UHL0 483 aaKnown RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 USP25Q9UHP3 1055 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CTDP1Q9Y5B0 961 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 IRF6O14896 467 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 ATP2A1O14983 1001 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 SLC37A4O43826 429 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CFBP00751 764 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CYP3A4P08684 503 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CIITAP33076 1130 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 HSD17B4P51659 736 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 TYRO3Q06418 890 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 CPXCR1Q8N123 301 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 PROCA1Q8NCQ7 364 aaPredicted RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 CNNM3Q8NE01 707 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 TBC1D5Q92609 795 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 RAVER2Q9HCJ3 691 aaKnown RBP15.98■□□□□ 0.15
SS18-201ENST00000269137 KIAA1468Q9P260 1216 aa15.98■□□□□ 0.15
SS18-201ENST00000269137 HOXA7P31268 230 aaPredicted RBP15.97■□□□□ 0.15
SS18-201ENST00000269137 KANK3Q6NY19 840 aa15.97■□□□□ 0.15
SS18-201ENST00000269137 SASS6Q6UVJ0 657 aa15.97■□□□□ 0.15
SS18-201ENST00000269137 OTUD5Q96G74 571 aa15.97■□□□□ 0.15
SS18-201ENST00000269137 LOC285556D6RIA3 1793 aa15.97■□□□□ 0.15
SS18-201ENST00000269137 DCAF8L1A6NGE4 600 aa15.96■□□□□ 0.15
SS18-201ENST00000269137 ACTN4O43707 911 aaKnown RBP15.96■□□□□ 0.15
SS18-201ENST00000269137 TXLNAP40222 546 aa15.96■□□□□ 0.15
SS18-201ENST00000269137 FXR2P51116 673 aaKnown RBP eCLIP15.96■□□□□ 0.15
SS18-201ENST00000269137 FKBP1BP68106 108 aa15.96■□□□□ 0.15
SS18-201ENST00000269137 CCSER1Q9C0I3 900 aa15.96■□□□□ 0.15
SS18-201ENST00000269137 EHMT1Q9H9B1 1298 aa15.96■□□□□ 0.15
SS18-201ENST00000269137 HOOK1Q9UJC3 728 aaKnown RBP15.96■□□□□ 0.15
SS18-201ENST00000269137 A0A087X0B3 334 aa15.96■□□□□ 0.14
SS18-201ENST00000269137 TRAF5O00463 557 aa15.96■□□□□ 0.14
SS18-201ENST00000269137 SLFN14P0C7P3 912 aa15.96■□□□□ 0.14
SS18-201ENST00000269137 XRCC6P12956 609 aaKnown RBP eCLIP15.96■□□□□ 0.14
SS18-201ENST00000269137 ALAS1P13196 640 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms