RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PHKA1P46020 1223 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 RECQLP46063 649 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 CRKP46108 304 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ARPP19P56211 112 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ASIC1P78348 528 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CCT2P78371 535 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 ZBTB17Q13105 803 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 PSMD2Q13200 908 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ADALQ6DHV7 355 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 NCAPH2Q6IBW4 605 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 KLHL10Q6JEL2 608 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CNNM3Q8NE01 707 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 SPAG5Q96R06 1193 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 STMN4Q9H169 189 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 SUGT1Q9Y2Z0 365 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 MSCO60682 206 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 SLC25A27O95847 323 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 PTGS1P23219 599 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GBP1P32455 592 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CIITAP33076 1130 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 STAT2P52630 851 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 SYT10Q6XYQ8 523 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 PLEKHM2Q8IWE5 1019 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CCDC26Q8TAB7 109 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 TCP11Q8WWU5 503 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 SKA1Q96BD8 255 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 PGBD4Q96DM1 585 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ZMAT2Q96NC0 199 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.61□□□□□ -1.03
USP3-201ENST00000268049 HESX1Q9UBX0 185 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 ATP11BQ9Y2G3 1177 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CTAGE9A4FU28 777 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CALUO43852 315 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 IGKV5-2P06315 115 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 EPB41P11171 864 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 EVCP57679 992 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 SCARF1Q14162 830 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 GPRC5AQ8NFJ5 357 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 CACTINQ8WUQ7 758 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 SLC7A3Q8WY07 619 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 N4BP2L2Q92802 583 aaPredicted RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 CELF1Q92879 486 aaKnown RBP8.61□□□□□ -1.03
USP3-201ENST00000268049 GPR108Q9NPR9 543 aa8.61□□□□□ -1.03
USP3-201ENST00000268049 USP17L12C9JPN9 530 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 USP17L21D6R901 530 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 BMP3P12645 472 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 ARHGAP15Q53QZ3 475 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 PDZD4Q76G19 769 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 SESTD1Q86VW0 696 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 TRMT2AQ8IZ69 625 aaKnown RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 STMN2Q93045 179 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 EHD2Q9NZN4 543 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 PHLPP1O60346 1717 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 POLR1AO95602 1720 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 ESYT2A0FGR8 921 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 SASH1O94885 1247 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 OAS2P29728 719 aaKnown RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 MAPK4P31152 587 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 PDE1CQ14123 709 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 STXBP2Q15833 593 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 DTHD1Q6ZMT9 781 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 TMEM179Q6ZVK1 233 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 ZNF713Q8N859 430 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 SLF1Q9BQI6 1058 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 SLC7A5P2Q9GIP4 190 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 BCL2L12Q9HB09 334 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 FEM1BQ9UK73 627 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 DNM3Q9UQ16 869 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 WDR64B1ANS9 1081 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 CAPN9O14815 690 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 ZW10O43264 779 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 PPP2R3AQ06190 1150 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 SETDB1Q15047 1291 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 AAK1Q2M2I8 961 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 RRAGBQ5VZM2 374 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 SLFN12Q8IYM2 578 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 EAF2Q96CJ1 260 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 DDX27Q96GQ7 796 aaKnown RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 LIMCH1Q9UPQ0 1083 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 NDUFB9Q9Y6M9 179 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 A0A1W2PRG0 241 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 TFAP4Q01664 338 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 NR1H3Q13133 447 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 CEP85LQ5SZL2 805 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 GBP7Q8N8V2 638 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.6□□□□□ -1.03
USP3-201ENST00000268049 MINPP1Q9UNW1 487 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 IKBKGQ9Y6K9 419 aa8.6□□□□□ -1.03
USP3-201ENST00000268049 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.6□□□□□ -1.03
USP3-201ENST00000268049 AOX1Q06278 1338 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 BICDL2A1A5D9 508 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 PFDN1O60925 122 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 TTLL1O95922 423 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 CYP2B6P20813 491 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 PLCD1P51178 756 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 APOBRQ0VD83 1088 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 MAP7Q14244 749 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 NEDD9Q14511 834 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 ELF2Q15723 593 aa8.59□□□□□ -1.03
USP3-201ENST00000268049 ANO6Q4KMQ2 910 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms