RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DDX25Q9UHL0 483 aaKnown RBP18.67■□□□□ 0.58
USP4-201ENST00000265560 GOLGA6L19H0YKK7 550 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 MAN1B1Q9UKM7 699 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 SLFN14P0C7P3 912 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 UVSSAQ2YD98 709 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 EAPPQ56P03 285 aaPredicted RBP18.66■□□□□ 0.58
USP4-201ENST00000265560 SH2D4AQ9H788 454 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 PICK1Q9NRD5 415 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 TUBE1Q9UJT0 475 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 PEX10O60683 326 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 PTMAP06454 111 aaKnown RBP18.66■□□□□ 0.58
USP4-201ENST00000265560 VCAM1P19320 739 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 LONP1P36776 959 aaKnown RBP18.66■□□□□ 0.58
USP4-201ENST00000265560 STAT6P42226 847 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 CUL4BQ13620 913 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 DCAF15Q66K64 600 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 PPP1R18Q6NYC8 613 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 SMARCE1Q969G3 411 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 PDLIM2Q96JY6 352 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 NUDT12Q9BQG2 462 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 TRIM5Q9C035 493 aa18.66■□□□□ 0.58
USP4-201ENST00000265560 RAVER2Q9HCJ3 691 aaKnown RBP18.66■□□□□ 0.58
USP4-201ENST00000265560 CENPFP49454 3210 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 PTPRAP18433 802 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 E2F4Q16254 413 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 LDHDQ86WU2 507 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 PRR16Q569H4 304 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 TRMT44Q8IYL2 757 aaKnown RBP18.65■□□□□ 0.58
USP4-201ENST00000265560 SCYL3Q8IZE3 742 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 KLRG1Q96E93 195 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 RPAP3Q9H6T3 665 aaPredicted RBP18.65■□□□□ 0.58
USP4-201ENST00000265560 TTC12Q9H892 705 aaPredicted RBP18.65■□□□□ 0.58
USP4-201ENST00000265560 SPDYE3A6NKU9 549 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 PTPN21Q16825 1174 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 KLHL10Q6JEL2 608 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 IQUBQ8NA54 791 aa18.65■□□□□ 0.58
USP4-201ENST00000265560 ADARB2Q9NS39 739 aaKnown RBP18.65■□□□□ 0.58
USP4-201ENST00000265560 NAALADL2Q58DX5 795 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 KRT26Q7Z3Y9 468 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 HAS1Q92839 578 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 MTMR9Q96QG7 549 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 MAPK8IP1Q9UQF2 711 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 FMR1Q06787 632 aaKnown RBP eCLIP18.64■□□□□ 0.57
USP4-201ENST00000265560 RRAGBQ5VZM2 374 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 PDXDC2PQ6P474 469 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 CABP7Q86V35 215 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 SULF1Q8IWU6 871 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 DCPSQ96C86 337 aaKnown RBP18.64■□□□□ 0.57
USP4-201ENST00000265560 CCPG1Q9ULG6 757 aa18.64■□□□□ 0.57
USP4-201ENST00000265560 ALAS1P13196 640 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 PLCG1P19174 1290 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 STAT3P40763 770 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 ARHGAP4P98171 946 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 HOOK2Q96ED9 719 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 KIAA1683Q9H0B3 1180 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 DISC1Q9NRI5 854 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 FEM1BQ9UK73 627 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 SSC5DA1L4H1 1573 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 FAM86B1E9PN63 330 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 NFIBO00712 420 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 FAM86B2P0C5J1 330 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 TXLNAP40222 546 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 ZNF280CQ8ND82 737 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 PURBQ96QR8 312 aaKnown RBP18.63■□□□□ 0.57
USP4-201ENST00000265560 MMTAG2Q9BU76 263 aaKnown RBP18.63■□□□□ 0.57
USP4-201ENST00000265560 RANBP17Q9H2T7 1088 aaKnown RBP18.63■□□□□ 0.57
USP4-201ENST00000265560 LRWD1Q9UFC0 647 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 USP2O75604 605 aaPredicted RBP18.63■□□□□ 0.57
USP4-201ENST00000265560 MMP14P50281 582 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 SLF1Q9BQI6 1058 aa18.63■□□□□ 0.57
USP4-201ENST00000265560 HOOK1Q9UJC3 728 aaKnown RBP18.63■□□□□ 0.57
USP4-201ENST00000265560 ATP1A3P13637 1013 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 BACE1P56817 501 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 STX17P56962 302 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 DPY19L2Q6NUT2 758 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 ZNF536O15090 1300 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 POTEIP0CG38 1075 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 POTEJP0CG39 1038 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 FAM177A1Q8N128 213 aaPredicted RBP18.62■□□□□ 0.57
USP4-201ENST00000265560 PRPF38AQ8NAV1 312 aaKnown RBP18.62■□□□□ 0.57
USP4-201ENST00000265560 ATG4CQ96DT6 458 aa18.62■□□□□ 0.57
USP4-201ENST00000265560 NAT10Q9H0A0 1025 aaKnown RBP18.62■□□□□ 0.57
USP4-201ENST00000265560 DRC7Q8IY82 874 aa18.61■□□□□ 0.57
USP4-201ENST00000265560 VGLL4Q14135 290 aa18.61■□□□□ 0.57
USP4-201ENST00000265560 TTLL12Q14166 644 aaPredicted RBP18.61■□□□□ 0.57
USP4-201ENST00000265560 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.61■□□□□ 0.57
USP4-201ENST00000265560 CLMNQ96JQ2 1002 aa18.61■□□□□ 0.57
USP4-201ENST00000265560 NRBP1Q9UHY1 535 aa18.61■□□□□ 0.57
USP4-201ENST00000265560 ZNF76P36508 570 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 DPYDQ12882 1025 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 MUM1L1Q5H9M0 696 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 SH3RF1Q7Z6J0 888 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 ZNF112Q9UJU3 913 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 PCDHA12Q9UN75 941 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 LAD1O00515 517 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 WDR46O15213 610 aaKnown RBP18.6■□□□□ 0.57
USP4-201ENST00000265560 CD44P16070 742 aaKnown RBP18.6■□□□□ 0.57
USP4-201ENST00000265560 PRPHP41219 470 aa18.6■□□□□ 0.57
USP4-201ENST00000265560 SARSP49591 514 aaKnown RBP18.6■□□□□ 0.57
USP4-201ENST00000265560 ECM1Q16610 540 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms